JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PTGES3_chr12_56658349_56693284	0/0	t0010	1416	1	1	0	0	0	0	copy fasta	PTGES3	chr12	56658349	56693284
PTGES3_chr12_56658349_56693284	0/0	t0011	1416	1	0	1	0	0	0	copy fasta	PTGES3	chr12	56658349	56693284
PTGES3_chr12_56658349_56693284	0/0	t0012	1416	1	1	0	0	0	0	copy fasta	PTGES3	chr12	56658349	56693284
PTGES_chr9_129733349_129758042	0/0	t0001	1289	48	1	11	30	0	6	copy fasta	PTGES	chr9	129733349	129758042
PTGES_chr9_129733349_129758042	0/1	t0002	1291	40	2	7	18	2	10	copy fasta	PTGES	chr9	129733349	129758042
PTGES_chr9_129733349_129758042	0/0	t0003	1289	39	6	15	10	2	6	copy fasta	PTGES	chr9	129733349	129758042
PTGES_chr9_129733349_129758042	1/0	t0004	1293	29	0	9	16	0	3	copy fasta	PTGES	chr9	129733349	129758042
PTGES_chr9_129733349_129758042	0/0	t0005	1285	21	7	3	11	0	0	copy fasta	PTGES	chr9	129733349	129758042
PTGES_chr9_129733349_129758042	0/0	t0006	1283	18	9	6	0	2	1	copy fasta	PTGES	chr9	129733349	129758042
PTGES_chr9_129733349_129758042	0/0	t0007	1295	16	3	2	7	1	3	copy fasta	PTGES	chr9	129733349	129758042
PTGES_chr9_129733349_129758042	0/0	t0008	1293	15	1	1	9	1	3	copy fasta	PTGES	chr9	129733349	129758042
PTGES_chr9_129733349_129758042	0/0	t0009	1291	13	0	1	11	0	1	copy fasta	PTGES	chr9	129733349	129758042
PTGES_chr9_129733349_129758042	0/0	t0010	1285	13	2	1	9	1	0	copy fasta	PTGES	chr9	129733349	129758042
PTGES_chr9_129733349_129758042	0/0	t0011	1279	11	0	0	11	0	0	copy fasta	PTGES	chr9	129733349	129758042
PTGES_chr9_129733349_129758042	0/0	t0012	1295	9	0	1	7	1	0	copy fasta	PTGES	chr9	129733349	129758042
PTGES_chr9_129733349_129758042	0/0	t0013	1295	9	0	2	6	0	1	copy fasta	PTGES	chr9	129733349	129758042
PTGES_chr9_129733349_129758042	0/0	t0014	1279	9	0	0	9	0	0	copy fasta	PTGES	chr9	129733349	129758042
PTGES_chr9_129733349_129758042	0/0	t0015	1297	8	3	0	4	0	1	copy fasta	PTGES	chr9	129733349	129758042
PTGES_chr9_129733349_129758042	0/0	t0016	1287	8	1	3	4	0	0	copy fasta	PTGES	chr9	129733349	129758042
PTGES_chr9_129733349_129758042	0/0	t0017	1293	7	7	0	0	0	0	copy fasta	PTGES	chr9	129733349	129758042
PTGES_chr9_129733349_129758042	0/0	t0018	1295	6	1	0	4	0	1	copy fasta	PTGES	chr9	129733349	129758042
PTGES_chr9_129733349_129758042	0/0	t0019	1299	5	0	0	4	0	1	copy fasta	PTGES	chr9	129733349	129758042
PTGES_chr9_129733349_129758042	0/0	t0020	1289	5	5	0	0	0	0	copy fasta	PTGES	chr9	129733349	129758042
PTGES_chr9_129733349_129758042	0/0	t0021	1291	5	5	0	0	0	0	copy fasta	PTGES	chr9	129733349	129758042
PTGES_chr9_129733349_129758042	0/0	t0022	1297	4	3	1	0	0	0	copy fasta	PTGES	chr9	129733349	129758042
PTGES_chr9_129733349_129758042	0/0	t0023	1291	4	0	0	3	0	1	copy fasta	PTGES	chr9	129733349	129758042
PTGES_chr9_129733349_129758042	0/0	t0024	1287	4	1	0	2	0	1	copy fasta	PTGES	chr9	129733349	129758042
PTGES_chr9_129733349_129758042	0/0	t0025	1299	4	1	2	0	0	1	copy fasta	PTGES	chr9	129733349	129758042
PTGES_chr9_129733349_129758042	0/0	t0026	1297	4	0	1	1	0	2	copy fasta	PTGES	chr9	129733349	129758042
PTGES_chr9_129733349_129758042	0/0	t0027	1301	3	1	0	2	0	0	copy fasta	PTGES	chr9	129733349	129758042
PTGES_chr9_129733349_129758042	0/0	t0028	1286	3	0	0	2	0	1	copy fasta	PTGES	chr9	129733349	129758042
PTGES_chr9_129733349_129758042	0/0	t0029	1289	3	0	1	0	2	0	copy fasta	PTGES	chr9	129733349	129758042
PTGES_chr9_129733349_129758042	0/0	t0030	1289	3	3	0	0	0	0	copy fasta	PTGES	chr9	129733349	129758042
PTGES_chr9_129733349_129758042	0/0	t0031	1297	3	0	0	3	0	0	copy fasta	PTGES	chr9	129733349	129758042
PTGES_chr9_129733349_129758042	0/0	t0032	1303	2	2	0	0	0	0	copy fasta	PTGES	chr9	129733349	129758042
PTGES_chr9_129733349_129758042	0/0	t0033	1297	2	2	0	0	0	0	copy fasta	PTGES	chr9	129733349	129758042
PTGES_chr9_129733349_129758042	0/0	t0034	1299	2	2	0	0	0	0	copy fasta	PTGES	chr9	129733349	129758042
PTGES_chr9_129733349_129758042	0/0	t0035	1297	2	2	0	0	0	0	copy fasta	PTGES	chr9	129733349	129758042
PTGES_chr9_129733349_129758042	0/0	t0036	1297	2	0	0	2	0	0	copy fasta	PTGES	chr9	129733349	129758042
PTGES_chr9_129733349_129758042	0/0	t0037	1281	2	0	0	2	0	0	copy fasta	PTGES	chr9	129733349	129758042
PTGES_chr9_129733349_129758042	0/0	t0038	1303	2	0	0	1	1	0	copy fasta	PTGES	chr9	129733349	129758042
PTGES_chr9_129733349_129758042	0/0	t0039	1301	2	0	0	2	0	0	copy fasta	PTGES	chr9	129733349	129758042
PTGES_chr9_129733349_129758042	0/0	t0040	1299	2	0	2	0	0	0	copy fasta	PTGES	chr9	129733349	129758042
PTGES_chr9_129733349_129758042	0/0	t0041	1292	2	0	2	0	0	0	copy fasta	PTGES	chr9	129733349	129758042
PTGES_chr9_129733349_129758042	0/0	t0042	1290	2	0	0	1	0	1	copy fasta	PTGES	chr9	129733349	129758042
PTGES_chr9_129733349_129758042	0/0	t0043	1289	2	0	2	0	0	0	copy fasta	PTGES	chr9	129733349	129758042
PTGES_chr9_129733349_129758042	0/0	t0044	1293	2	0	2	0	0	0	copy fasta	PTGES	chr9	129733349	129758042
PTGES_chr9_129733349_129758042	0/0	t0045	1279	1	0	0	1	0	0	copy fasta	PTGES	chr9	129733349	129758042
PTGES_chr9_129733349_129758042	0/0	t0046	1291	1	0	0	1	0	0	copy fasta	PTGES	chr9	129733349	129758042
PTGES_chr9_129733349_129758042	0/0	t0047	1297	1	1	0	0	0	0	copy fasta	PTGES	chr9	129733349	129758042