JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PTGES_chr9_129733349_129758042	0/0	t0048	1305	1	1	0	0	0	0	copy fasta	PTGES	chr9	129733349	129758042
PTGES_chr9_129733349_129758042	0/0	t0049	1296	1	0	0	1	0	0	copy fasta	PTGES	chr9	129733349	129758042
PTGES_chr9_129733349_129758042	0/0	t0050	1292	1	0	0	1	0	0	copy fasta	PTGES	chr9	129733349	129758042
PTGES_chr9_129733349_129758042	0/0	t0051	1285	1	0	0	1	0	0	copy fasta	PTGES	chr9	129733349	129758042
PTGES_chr9_129733349_129758042	0/0	t0052	1295	1	1	0	0	0	0	copy fasta	PTGES	chr9	129733349	129758042
PTGES_chr9_129733349_129758042	0/0	t0053	1290	1	0	1	0	0	0	copy fasta	PTGES	chr9	129733349	129758042
PTGES_chr9_129733349_129758042	0/0	t0054	1282	1	0	0	1	0	0	copy fasta	PTGES	chr9	129733349	129758042
PTGES_chr9_129733349_129758042	0/0	t0055	1283	1	1	0	0	0	0	copy fasta	PTGES	chr9	129733349	129758042
PTGES_chr9_129733349_129758042	0/0	t0056	1295	1	1	0	0	0	0	copy fasta	PTGES	chr9	129733349	129758042
PTGES_chr9_129733349_129758042	0/0	t0057	1293	1	1	0	0	0	0	copy fasta	PTGES	chr9	129733349	129758042
PTGES_chr9_129733349_129758042	0/0	t0058	1297	1	1	0	0	0	0	copy fasta	PTGES	chr9	129733349	129758042
PTGES_chr9_129733349_129758042	0/0	t0059	1301	1	1	0	0	0	0	copy fasta	PTGES	chr9	129733349	129758042
PTGES_chr9_129733349_129758042	0/0	t0060	1298	1	0	0	0	0	1	copy fasta	PTGES	chr9	129733349	129758042
PTGES_chr9_129733349_129758042	0/0	t0061	1293	1	0	0	0	1	0	copy fasta	PTGES	chr9	129733349	129758042
PTGES_chr9_129733349_129758042	0/0	t0062	1285	1	0	0	1	0	0	copy fasta	PTGES	chr9	129733349	129758042
PTGES_chr9_129733349_129758042	0/0	t0063	1309	1	1	0	0	0	0	copy fasta	PTGES	chr9	129733349	129758042
PTGES_chr9_129733349_129758042	0/0	t0064	1297	1	1	0	0	0	0	copy fasta	PTGES	chr9	129733349	129758042
PTGES_chr9_129733349_129758042	0/0	t0065	1297	1	1	0	0	0	0	copy fasta	PTGES	chr9	129733349	129758042
PTGES_chr9_129733349_129758042	0/0	t0066	1281	1	0	0	0	0	1	copy fasta	PTGES	chr9	129733349	129758042
PTGES_chr9_129733349_129758042	0/0	t0067	1295	1	1	0	0	0	0	copy fasta	PTGES	chr9	129733349	129758042
PTGES_chr9_129733349_129758042	0/0	t0068	1291	1	1	0	0	0	0	copy fasta	PTGES	chr9	129733349	129758042
PTGES_chr9_129733349_129758042	0/0	t0069	1291	1	1	0	0	0	0	copy fasta	PTGES	chr9	129733349	129758042
PTGES_chr9_129733349_129758042	0/0	t0070	1287	1	0	1	0	0	0	copy fasta	PTGES	chr9	129733349	129758042
PTGES_chr9_129733349_129758042	0/0	t0071	1289	1	0	1	0	0	0	copy fasta	PTGES	chr9	129733349	129758042
PTGES_chr9_129733349_129758042	0/0	t0072	1297	1	0	1	0	0	0	copy fasta	PTGES	chr9	129733349	129758042
PTGES_chr9_129733349_129758042	0/0	t0073	1291	1	1	0	0	0	0	copy fasta	PTGES	chr9	129733349	129758042
PTGES_chr9_129733349_129758042	0/0	t0074	1291	1	0	1	0	0	0	copy fasta	PTGES	chr9	129733349	129758042
PTGES_chr9_129733349_129758042	0/0	t0075	1289	1	1	0	0	0	0	copy fasta	PTGES	chr9	129733349	129758042
PTGFRN_chr1_116904916_116995353	1/0	t0001	3675	117	40	19	40	8	9	copy fasta	PTGFRN	chr1	116904916	116995353
PTGFRN_chr1_116904916_116995353	0/0	t0002	3673	46	3	2	39	0	2	copy fasta	PTGFRN	chr1	116904916	116995353
PTGFRN_chr1_116904916_116995353	0/0	t0003	3674	40	1	11	18	3	7	copy fasta	PTGFRN	chr1	116904916	116995353
PTGFRN_chr1_116904916_116995353	0/0	t0004	3673	33	10	7	11	3	2	copy fasta	PTGFRN	chr1	116904916	116995353
PTGFRN_chr1_116904916_116995353	0/0	t0005	3676	9	4	1	3	0	1	copy fasta	PTGFRN	chr1	116904916	116995353
PTGFRN_chr1_116904916_116995353	0/0	t0006	3674	6	0	1	5	0	0	copy fasta	PTGFRN	chr1	116904916	116995353
PTGFRN_chr1_116904916_116995353	0/0	t0007	3673	5	0	3	0	1	1	copy fasta	PTGFRN	chr1	116904916	116995353
PTGFRN_chr1_116904916_116995353	0/1	t0008	3673	4	0	2	0	0	1	copy fasta	PTGFRN	chr1	116904916	116995353
PTGFRN_chr1_116904916_116995353	0/0	t0009	3670	3	3	0	0	0	0	copy fasta	PTGFRN	chr1	116904916	116995353
PTGFRN_chr1_116904916_116995353	0/0	t0010	3674	3	0	1	1	0	1	copy fasta	PTGFRN	chr1	116904916	116995353
PTGFRN_chr1_116904916_116995353	0/0	t0011	3674	3	3	0	0	0	0	copy fasta	PTGFRN	chr1	116904916	116995353
PTGFRN_chr1_116904916_116995353	0/0	t0012	3674	3	3	0	0	0	0	copy fasta	PTGFRN	chr1	116904916	116995353
PTGFRN_chr1_116904916_116995353	0/0	t0013	3675	3	3	0	0	0	0	copy fasta	PTGFRN	chr1	116904916	116995353
PTGFRN_chr1_116904916_116995353	0/0	t0014	3673	3	3	0	0	0	0	copy fasta	PTGFRN	chr1	116904916	116995353
PTGFRN_chr1_116904916_116995353	0/0	t0015	3675	3	0	0	3	0	0	copy fasta	PTGFRN	chr1	116904916	116995353
PTGFRN_chr1_116904916_116995353	0/0	t0016	3673	2	0	0	0	0	2	copy fasta	PTGFRN	chr1	116904916	116995353
PTGFRN_chr1_116904916_116995353	0/0	t0017	3674	2	1	1	0	0	0	copy fasta	PTGFRN	chr1	116904916	116995353
PTGFRN_chr1_116904916_116995353	0/0	t0018	3674	2	2	0	0	0	0	copy fasta	PTGFRN	chr1	116904916	116995353
PTGFRN_chr1_116904916_116995353	0/0	t0019	3675	2	2	0	0	0	0	copy fasta	PTGFRN	chr1	116904916	116995353
PTGFRN_chr1_116904916_116995353	0/0	t0020	3675	2	2	0	0	0	0	copy fasta	PTGFRN	chr1	116904916	116995353
PTGFRN_chr1_116904916_116995353	0/0	t0021	3675	2	1	1	0	0	0	copy fasta	PTGFRN	chr1	116904916	116995353
PTGFRN_chr1_116904916_116995353	0/0	t0022	3674	2	0	2	0	0	0	copy fasta	PTGFRN	chr1	116904916	116995353