JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PTGFRN_chr1_116904916_116995353	0/0	t0023	3670	1	1	0	0	0	0	copy fasta	PTGFRN	chr1	116904916	116995353
PTGFRN_chr1_116904916_116995353	0/0	t0024	3673	1	1	0	0	0	0	copy fasta	PTGFRN	chr1	116904916	116995353
PTGFRN_chr1_116904916_116995353	0/0	t0025	3673	1	0	0	1	0	0	copy fasta	PTGFRN	chr1	116904916	116995353
PTGFRN_chr1_116904916_116995353	0/0	t0026	3673	1	0	0	0	0	1	copy fasta	PTGFRN	chr1	116904916	116995353
PTGFRN_chr1_116904916_116995353	0/0	t0027	3673	1	0	0	1	0	0	copy fasta	PTGFRN	chr1	116904916	116995353
PTGFRN_chr1_116904916_116995353	0/0	t0028	3673	1	1	0	0	0	0	copy fasta	PTGFRN	chr1	116904916	116995353
PTGFRN_chr1_116904916_116995353	0/0	t0029	3674	1	1	0	0	0	0	copy fasta	PTGFRN	chr1	116904916	116995353
PTGFRN_chr1_116904916_116995353	0/0	t0030	3674	1	1	0	0	0	0	copy fasta	PTGFRN	chr1	116904916	116995353
PTGFRN_chr1_116904916_116995353	0/0	t0031	3675	1	0	0	0	1	0	copy fasta	PTGFRN	chr1	116904916	116995353
PTGFRN_chr1_116904916_116995353	0/0	t0032	3675	1	0	0	1	0	0	copy fasta	PTGFRN	chr1	116904916	116995353
PTGFRN_chr1_116904916_116995353	0/0	t0033	3675	1	1	0	0	0	0	copy fasta	PTGFRN	chr1	116904916	116995353
PTGFRN_chr1_116904916_116995353	0/0	t0034	3675	1	1	0	0	0	0	copy fasta	PTGFRN	chr1	116904916	116995353
PTGFRN_chr1_116904916_116995353	0/0	t0035	3675	1	0	0	1	0	0	copy fasta	PTGFRN	chr1	116904916	116995353
PTGFRN_chr1_116904916_116995353	0/0	t0036	3676	1	1	0	0	0	0	copy fasta	PTGFRN	chr1	116904916	116995353
PTGFRN_chr1_116904916_116995353	0/0	t0037	3676	1	1	0	0	0	0	copy fasta	PTGFRN	chr1	116904916	116995353
PTGFRN_chr1_116904916_116995353	0/0	t0038	3673	1	0	1	0	0	0	copy fasta	PTGFRN	chr1	116904916	116995353
PTGFRN_chr1_116904916_116995353	0/0	t0039	3674	1	0	1	0	0	0	copy fasta	PTGFRN	chr1	116904916	116995353
PTGFRN_chr1_116904916_116995353	0/0	t0040	3674	1	0	0	0	0	1	copy fasta	PTGFRN	chr1	116904916	116995353
PTGFRN_chr1_116904916_116995353	0/0	t0041	3676	1	0	1	0	0	0	copy fasta	PTGFRN	chr1	116904916	116995353
PTGFR_chr1_78485974_78545701	1/1	t0001	4350	272	43	50	131	9	37	copy fasta	PTGFR	chr1	78485974	78545701
PTGFR_chr1_78485974_78545701	0/0	t0002	4349	29	17	8	2	1	1	copy fasta	PTGFR	chr1	78485974	78545701
PTGFR_chr1_78485974_78545701	0/0	t0003	4350	26	0	0	26	0	0	copy fasta	PTGFR	chr1	78485974	78545701
PTGFR_chr1_78485974_78545701	0/0	t0004	4356	12	3	7	0	0	2	copy fasta	PTGFR	chr1	78485974	78545701
PTGFR_chr1_78485974_78545701	0/0	t0005	4350	5	2	0	2	0	1	copy fasta	PTGFR	chr1	78485974	78545701
PTGFR_chr1_78485974_78545701	0/0	t0006	4355	5	0	1	0	2	2	copy fasta	PTGFR	chr1	78485974	78545701
PTGFR_chr1_78485974_78545701	0/0	t0007	4356	4	4	0	0	0	0	copy fasta	PTGFR	chr1	78485974	78545701
PTGFR_chr1_78485974_78545701	0/0	t0008	4354	3	2	0	0	0	1	copy fasta	PTGFR	chr1	78485974	78545701
PTGFR_chr1_78485974_78545701	0/0	t0009	4356	3	3	0	0	0	0	copy fasta	PTGFR	chr1	78485974	78545701
PTGFR_chr1_78485974_78545701	0/0	t0010	4350	2	0	0	2	0	0	copy fasta	PTGFR	chr1	78485974	78545701
PTGFR_chr1_78485974_78545701	0/0	t0011	4351	1	1	0	0	0	0	copy fasta	PTGFR	chr1	78485974	78545701
PTGFR_chr1_78485974_78545701	0/0	t0012	4350	1	1	0	0	0	0	copy fasta	PTGFR	chr1	78485974	78545701
PTGFR_chr1_78485974_78545701	0/0	t0013	4350	1	1	0	0	0	0	copy fasta	PTGFR	chr1	78485974	78545701
PTGFR_chr1_78485974_78545701	0/0	t0014	4350	1	1	0	0	0	0	copy fasta	PTGFR	chr1	78485974	78545701
PTGFR_chr1_78485974_78545701	0/0	t0015	4350	1	0	1	0	0	0	copy fasta	PTGFR	chr1	78485974	78545701
PTGFR_chr1_78485974_78545701	0/0	t0016	4350	1	1	0	0	0	0	copy fasta	PTGFR	chr1	78485974	78545701
PTGFR_chr1_78485974_78545701	0/0	t0017	4350	1	0	0	1	0	0	copy fasta	PTGFR	chr1	78485974	78545701
PTGFR_chr1_78485974_78545701	0/0	t0018	4350	1	0	0	1	0	0	copy fasta	PTGFR	chr1	78485974	78545701
PTGFR_chr1_78485974_78545701	0/0	t0019	4349	1	0	0	0	1	0	copy fasta	PTGFR	chr1	78485974	78545701
PTGFR_chr1_78485974_78545701	0/0	t0020	4350	1	0	0	1	0	0	copy fasta	PTGFR	chr1	78485974	78545701
PTGFR_chr1_78485974_78545701	0/0	t0021	4354	1	1	0	0	0	0	copy fasta	PTGFR	chr1	78485974	78545701
PTGFR_chr1_78485974_78545701	0/0	t0022	4355	1	1	0	0	0	0	copy fasta	PTGFR	chr1	78485974	78545701
PTGFR_chr1_78485974_78545701	0/0	t0023	4355	1	1	0	0	0	0	copy fasta	PTGFR	chr1	78485974	78545701
PTGFR_chr1_78485974_78545701	0/0	t0024	4355	1	1	0	0	0	0	copy fasta	PTGFR	chr1	78485974	78545701
PTGFR_chr1_78485974_78545701	0/0	t0025	4356	1	1	0	0	0	0	copy fasta	PTGFR	chr1	78485974	78545701
PTGFR_chr1_78485974_78545701	0/0	t0026	4355	1	1	0	0	0	0	copy fasta	PTGFR	chr1	78485974	78545701
PTGFR_chr1_78485974_78545701	0/0	t0027	4354	1	1	0	0	0	0	copy fasta	PTGFR	chr1	78485974	78545701
PTGFR_chr1_78485974_78545701	0/0	t0028	4356	1	0	1	0	0	0	copy fasta	PTGFR	chr1	78485974	78545701
PTGFR_chr1_78485974_78545701	0/0	t0029	4356	1	1	0	0	0	0	copy fasta	PTGFR	chr1	78485974	78545701
PTGFR_chr1_78485974_78545701	0/0	t0030	4349	1	1	0	0	0	0	copy fasta	PTGFR	chr1	78485974	78545701
PTGFR_chr1_78485974_78545701	0/0	t0031	4354	1	1	0	0	0	0	copy fasta	PTGFR	chr1	78485974	78545701