Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ACER1_chr19_6301142_6338612	0/0	t0004	634	1	1	0	0	0	0	copy fasta	ACER1	chr19	6301142	6338612
ACER1_chr19_6301142_6338612	0/0	t0005	634	1	1	0	0	0	0	copy fasta	ACER1	chr19	6301142	6338612
ACER1_chr19_6301142_6338612	0/0	t0006	634	1	1	0	0	0	0	copy fasta	ACER1	chr19	6301142	6338612
ACER1_chr19_6301142_6338612	0/0	t0007	634	1	0	0	1	0	0	copy fasta	ACER1	chr19	6301142	6338612
ACER2_chr9_19404009_19457505	1/1	t0001	1946	167	23	21	93	4	24	copy fasta	ACER2	chr9	19404009	19457505
ACER2_chr9_19404009_19457505	0/0	t0002	1947	70	11	28	16	5	10	copy fasta	ACER2	chr9	19404009	19457505
ACER2_chr9_19404009_19457505	0/0	t0003	1946	15	0	3	11	1	0	copy fasta	ACER2	chr9	19404009	19457505
ACER2_chr9_19404009_19457505	0/0	t0004	1946	14	10	3	0	1	0	copy fasta	ACER2	chr9	19404009	19457505
ACER2_chr9_19404009_19457505	0/0	t0005	1946	14	13	1	0	0	0	copy fasta	ACER2	chr9	19404009	19457505
ACER2_chr9_19404009_19457505	0/0	t0006	1946	13	12	1	0	0	0	copy fasta	ACER2	chr9	19404009	19457505
ACER2_chr9_19404009_19457505	0/0	t0007	1946	12	0	0	12	0	0	copy fasta	ACER2	chr9	19404009	19457505
ACER2_chr9_19404009_19457505	0/0	t0008	1947	9	2	6	0	1	0	copy fasta	ACER2	chr9	19404009	19457505
ACER2_chr9_19404009_19457505	0/0	t0009	1946	8	8	0	0	0	0	copy fasta	ACER2	chr9	19404009	19457505
ACER2_chr9_19404009_19457505	0/0	t0010	1946	5	4	1	0	0	0	copy fasta	ACER2	chr9	19404009	19457505
ACER2_chr9_19404009_19457505	0/0	t0011	1946	5	5	0	0	0	0	copy fasta	ACER2	chr9	19404009	19457505
ACER2_chr9_19404009_19457505	0/0	t0012	1946	3	0	0	2	1	0	copy fasta	ACER2	chr9	19404009	19457505
ACER2_chr9_19404009_19457505	0/0	t0013	1947	3	3	0	0	0	0	copy fasta	ACER2	chr9	19404009	19457505
ACER2_chr9_19404009_19457505	0/0	t0014	1946	2	2	0	0	0	0	copy fasta	ACER2	chr9	19404009	19457505
ACER2_chr9_19404009_19457505	0/0	t0015	1947	2	0	0	0	2	0	copy fasta	ACER2	chr9	19404009	19457505
ACER2_chr9_19404009_19457505	0/0	t0016	1946	2	2	0	0	0	0	copy fasta	ACER2	chr9	19404009	19457505
ACER2_chr9_19404009_19457505	0/0	t0017	1946	1	1	0	0	0	0	copy fasta	ACER2	chr9	19404009	19457505
ACER2_chr9_19404009_19457505	0/0	t0018	1946	1	1	0	0	0	0	copy fasta	ACER2	chr9	19404009	19457505
ACER2_chr9_19404009_19457505	0/0	t0019	1946	1	1	0	0	0	0	copy fasta	ACER2	chr9	19404009	19457505
ACER2_chr9_19404009_19457505	0/0	t0020	1946	1	0	0	1	0	0	copy fasta	ACER2	chr9	19404009	19457505
ACER2_chr9_19404009_19457505	0/0	t0021	1946	1	0	0	1	0	0	copy fasta	ACER2	chr9	19404009	19457505
ACER2_chr9_19404009_19457505	0/0	t0022	1947	1	0	0	1	0	0	copy fasta	ACER2	chr9	19404009	19457505
ACER2_chr9_19404009_19457505	0/0	t0023	1946	1	0	0	0	1	0	copy fasta	ACER2	chr9	19404009	19457505
ACER2_chr9_19404009_19457505	0/0	t0024	1946	1	0	0	1	0	0	copy fasta	ACER2	chr9	19404009	19457505
ACER2_chr9_19404009_19457505	0/0	t0025	1947	1	0	0	0	1	0	copy fasta	ACER2	chr9	19404009	19457505
ACER2_chr9_19404009_19457505	0/0	t0026	1947	1	0	0	0	1	0	copy fasta	ACER2	chr9	19404009	19457505
ACER2_chr9_19404009_19457505	0/0	t0027	1946	1	0	0	1	0	0	copy fasta	ACER2	chr9	19404009	19457505
ACER2_chr9_19404009_19457505	0/0	t0028	1946	1	0	0	0	0	1	copy fasta	ACER2	chr9	19404009	19457505
ACER2_chr9_19404009_19457505	0/0	t0029	1946	1	0	0	0	0	1	copy fasta	ACER2	chr9	19404009	19457505
ACER2_chr9_19404009_19457505	0/0	t0030	1946	1	0	0	1	0	0	copy fasta	ACER2	chr9	19404009	19457505
ACER3_chr11_76855918_77031797	0/0	t0001	6530	36	1	10	14	4	7	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0002	6515	27	1	6	17	2	1	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0003	6528	16	1	7	7	1	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0004	6529	11	1	2	5	0	3	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0005	6514	9	1	0	6	0	2	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0006	6511	8	0	4	3	0	1	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0007	6514	6	0	0	6	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0008	6527	6	0	0	6	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0009	6531	6	0	1	4	0	1	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	1/0	t0010	6530	6	0	5	0	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0011	6510	6	6	0	0	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0012	6516	5	0	1	1	1	2	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0013	6516	5	2	0	1	0	2	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0014	6521	5	0	4	0	1	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0015	6513	5	0	0	5	0	0	copy fasta	ACER3	chr11	76855918	77031797
ACER3_chr11_76855918_77031797	0/0	t0016	6511	5	5	0	0	0	0	copy fasta	ACER3	chr11	76855918	77031797