Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ATP8B3_chr19_1777075_1817276	0/0	t0011	1193	4	3	1	0	0	0	copy fasta	ATP8B3	chr19	1777075	1817276
ATP8B3_chr19_1777075_1817276	0/0	t0012	1193	2	2	0	0	0	0	copy fasta	ATP8B3	chr19	1777075	1817276
ATP8B3_chr19_1777075_1817276	0/0	t0013	1193	2	0	2	0	0	0	copy fasta	ATP8B3	chr19	1777075	1817276
ATP8B3_chr19_1777075_1817276	0/0	t0014	1193	1	1	0	0	0	0	copy fasta	ATP8B3	chr19	1777075	1817276
ATP8B3_chr19_1777075_1817276	0/0	t0015	1193	1	1	0	0	0	0	copy fasta	ATP8B3	chr19	1777075	1817276
ATP8B3_chr19_1777075_1817276	0/0	t0016	1193	1	0	0	1	0	0	copy fasta	ATP8B3	chr19	1777075	1817276
ATP8B3_chr19_1777075_1817276	0/0	t0017	1193	1	1	0	0	0	0	copy fasta	ATP8B3	chr19	1777075	1817276
ATP8B3_chr19_1777075_1817276	0/0	t0018	1193	1	0	0	1	0	0	copy fasta	ATP8B3	chr19	1777075	1817276
ATP8B3_chr19_1777075_1817276	0/0	t0019	1193	1	0	1	0	0	0	copy fasta	ATP8B3	chr19	1777075	1817276
ATP8B3_chr19_1777075_1817276	0/0	t0020	1193	1	0	0	0	0	1	copy fasta	ATP8B3	chr19	1777075	1817276
ATP8B3_chr19_1777075_1817276	0/0	t0021	1193	1	1	0	0	0	0	copy fasta	ATP8B3	chr19	1777075	1817276
ATP8B3_chr19_1777075_1817276	0/0	t0022	1193	1	0	0	0	0	1	copy fasta	ATP8B3	chr19	1777075	1817276
ATP8B4_chr15_49853238_50124233	1/0	t0001	2110	109	28	26	37	7	10	copy fasta	ATP8B4	chr15	49853238	50124233
ATP8B4_chr15_49853238_50124233	0/0	t0002	2110	60	14	11	30	0	5	copy fasta	ATP8B4	chr15	49853238	50124233
ATP8B4_chr15_49853238_50124233	0/1	t0003	2108	29	4	7	1	6	10	copy fasta	ATP8B4	chr15	49853238	50124233
ATP8B4_chr15_49853238_50124233	0/0	t0004	2108	9	7	1	1	0	0	copy fasta	ATP8B4	chr15	49853238	50124233
ATP8B4_chr15_49853238_50124233	0/0	t0005	2110	5	5	0	0	0	0	copy fasta	ATP8B4	chr15	49853238	50124233
ATP8B4_chr15_49853238_50124233	0/0	t0006	2108	5	1	0	0	1	3	copy fasta	ATP8B4	chr15	49853238	50124233
ATP8B4_chr15_49853238_50124233	0/0	t0007	2111	4	0	1	0	2	1	copy fasta	ATP8B4	chr15	49853238	50124233
ATP8B4_chr15_49853238_50124233	0/0	t0008	2110	3	0	3	0	0	0	copy fasta	ATP8B4	chr15	49853238	50124233
ATP8B4_chr15_49853238_50124233	0/0	t0009	2112	3	3	0	0	0	0	copy fasta	ATP8B4	chr15	49853238	50124233
ATP8B4_chr15_49853238_50124233	0/0	t0010	2111	3	3	0	0	0	0	copy fasta	ATP8B4	chr15	49853238	50124233
ATP8B4_chr15_49853238_50124233	0/0	t0011	2110	2	2	0	0	0	0	copy fasta	ATP8B4	chr15	49853238	50124233
ATP8B4_chr15_49853238_50124233	0/0	t0012	2108	2	0	0	2	0	0	copy fasta	ATP8B4	chr15	49853238	50124233
ATP8B4_chr15_49853238_50124233	0/0	t0013	2111	2	0	0	0	0	2	copy fasta	ATP8B4	chr15	49853238	50124233
ATP8B4_chr15_49853238_50124233	0/0	t0014	2110	1	0	1	0	0	0	copy fasta	ATP8B4	chr15	49853238	50124233
ATP8B4_chr15_49853238_50124233	0/0	t0015	2110	1	1	0	0	0	0	copy fasta	ATP8B4	chr15	49853238	50124233
ATP8B4_chr15_49853238_50124233	0/0	t0016	2111	1	0	0	1	0	0	copy fasta	ATP8B4	chr15	49853238	50124233
ATP8B4_chr15_49853238_50124233	0/0	t0017	2112	1	1	0	0	0	0	copy fasta	ATP8B4	chr15	49853238	50124233
ATP8B4_chr15_49853238_50124233	0/0	t0018	2112	1	1	0	0	0	0	copy fasta	ATP8B4	chr15	49853238	50124233
ATP8B4_chr15_49853238_50124233	0/0	t0019	2108	1	1	0	0	0	0	copy fasta	ATP8B4	chr15	49853238	50124233
ATP8B4_chr15_49853238_50124233	0/0	t0020	2108	1	1	0	0	0	0	copy fasta	ATP8B4	chr15	49853238	50124233
ATP8B4_chr15_49853238_50124233	0/0	t0021	2108	1	0	0	0	0	1	copy fasta	ATP8B4	chr15	49853238	50124233
ATP8B4_chr15_49853238_50124233	0/0	t0022	2108	1	1	0	0	0	0	copy fasta	ATP8B4	chr15	49853238	50124233
ATP8B4_chr15_49853238_50124233	0/0	t0023	2110	1	0	0	1	0	0	copy fasta	ATP8B4	chr15	49853238	50124233
ATP8B4_chr15_49853238_50124233	0/0	t0024	2110	1	1	0	0	0	0	copy fasta	ATP8B4	chr15	49853238	50124233
ATP8B4_chr15_49853238_50124233	0/0	t0025	2110	1	1	0	0	0	0	copy fasta	ATP8B4	chr15	49853238	50124233
ATP8B4_chr15_49853238_50124233	0/0	t0026	2110	1	0	0	1	0	0	copy fasta	ATP8B4	chr15	49853238	50124233
ATP8B4_chr15_49853238_50124233	0/0	t0027	2110	1	1	0	0	0	0	copy fasta	ATP8B4	chr15	49853238	50124233
ATP8B4_chr15_49853238_50124233	0/0	t0028	2110	1	1	0	0	0	0	copy fasta	ATP8B4	chr15	49853238	50124233
ATP8B4_chr15_49853238_50124233	0/0	t0029	2108	1	1	0	0	0	0	copy fasta	ATP8B4	chr15	49853238	50124233
ATP8B4_chr15_49853238_50124233	0/0	t0030	2108	1	1	0	0	0	0	copy fasta	ATP8B4	chr15	49853238	50124233
ATP8B4_chr15_49853238_50124233	0/0	t0031	2110	1	1	0	0	0	0	copy fasta	ATP8B4	chr15	49853238	50124233
ATP9A_chr20_51591514_51773390	0/0	t0001	4726	43	1	10	20	4	8	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	t0002	4724	28	3	6	17	0	2	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/1	t0003	4720	28	0	11	14	0	2	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	t0004	4719	20	0	4	14	1	1	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	t0005	4717	13	0	6	0	5	2	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	1/0	t0006	4719	12	0	0	11	0	0	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	t0007	4720	11	4	2	2	1	2	copy fasta	ATP9A	chr20	51591514	51773390