JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PTGFR_chr1_78485974_78545701	0/0	t0032	4355	1	1	0	0	0	0	copy fasta	PTGFR	chr1	78485974	78545701
PTGFR_chr1_78485974_78545701	0/0	t0033	4350	1	0	0	1	0	0	copy fasta	PTGFR	chr1	78485974	78545701
PTGFR_chr1_78485974_78545701	0/0	t0034	4350	1	0	0	1	0	0	copy fasta	PTGFR	chr1	78485974	78545701
PTGFR_chr1_78485974_78545701	0/0	t0035	4350	1	0	0	0	1	0	copy fasta	PTGFR	chr1	78485974	78545701
PTGIR_chr19_46615468_46630089	1/0	t0001	918	322	45	59	178	12	27	copy fasta	PTGIR	chr19	46615468	46630089
PTGIR_chr19_46615468_46630089	0/1	t0002	919	46	13	15	8	0	9	copy fasta	PTGIR	chr19	46615468	46630089
PTGIR_chr19_46615468_46630089	0/0	t0003	918	24	15	7	0	0	2	copy fasta	PTGIR	chr19	46615468	46630089
PTGIR_chr19_46615468_46630089	0/0	t0004	918	5	4	1	0	0	0	copy fasta	PTGIR	chr19	46615468	46630089
PTGIR_chr19_46615468_46630089	0/0	t0005	919	4	4	0	0	0	0	copy fasta	PTGIR	chr19	46615468	46630089
PTGIR_chr19_46615468_46630089	0/0	t0006	919	2	2	0	0	0	0	copy fasta	PTGIR	chr19	46615468	46630089
PTGIR_chr19_46615468_46630089	0/0	t0007	918	2	2	0	0	0	0	copy fasta	PTGIR	chr19	46615468	46630089
PTGIR_chr19_46615468_46630089	0/0	t0008	918	2	0	0	2	0	0	copy fasta	PTGIR	chr19	46615468	46630089
PTGIR_chr19_46615468_46630089	0/0	t0009	918	2	0	0	2	0	0	copy fasta	PTGIR	chr19	46615468	46630089
PTGIR_chr19_46615468_46630089	0/0	t0010	918	2	2	0	0	0	0	copy fasta	PTGIR	chr19	46615468	46630089
PTGIR_chr19_46615468_46630089	0/0	t0011	918	2	0	0	0	0	2	copy fasta	PTGIR	chr19	46615468	46630089
PTGIR_chr19_46615468_46630089	0/0	t0012	918	1	0	0	1	0	0	copy fasta	PTGIR	chr19	46615468	46630089
PTGIR_chr19_46615468_46630089	0/0	t0013	918	1	1	0	0	0	0	copy fasta	PTGIR	chr19	46615468	46630089
PTGIR_chr19_46615468_46630089	0/0	t0014	918	1	0	0	1	0	0	copy fasta	PTGIR	chr19	46615468	46630089
PTGIR_chr19_46615468_46630089	0/0	t0015	918	1	0	0	1	0	0	copy fasta	PTGIR	chr19	46615468	46630089
PTGIR_chr19_46615468_46630089	0/0	t0016	918	1	1	0	0	0	0	copy fasta	PTGIR	chr19	46615468	46630089
PTGIR_chr19_46615468_46630089	0/0	t0017	918	1	0	0	1	0	0	copy fasta	PTGIR	chr19	46615468	46630089
PTGIR_chr19_46615468_46630089	0/0	t0018	919	1	1	0	0	0	0	copy fasta	PTGIR	chr19	46615468	46630089
PTGIS_chr20_49498874_49573137	1/1	t0001	4068	67	2	10	42	1	10	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	t0002	4070	39	6	13	12	3	5	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	t0003	4068	30	3	4	12	4	7	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	t0004	4086	16	0	5	7	3	1	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	t0005	4088	15	2	2	8	1	2	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	t0006	4086	13	3	5	4	0	1	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	t0007	4077	8	5	1	1	0	1	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	t0008	4077	6	0	1	3	0	2	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	t0009	4072	6	6	0	0	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	t0010	4090	5	3	2	0	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	t0011	4079	5	0	0	2	0	3	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	t0012	4072	4	2	1	0	0	1	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	t0013	4068	4	0	0	4	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	t0014	4068	4	4	0	0	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	t0015	4090	3	3	0	0	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	t0016	4081	3	1	2	0	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	t0017	4077	3	2	1	0	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	t0018	4069	3	0	0	2	0	1	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	t0019	4070	3	0	0	3	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	t0020	4069	3	3	0	0	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	t0021	4099	2	1	0	0	0	1	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	t0022	4097	2	2	0	0	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	t0023	4090	2	2	0	0	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	t0024	4086	2	0	2	0	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	t0025	4088	2	0	0	2	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	t0026	4087	2	2	0	0	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	t0027	4081	2	2	0	0	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	t0028	4079	2	2	0	0	0	0	copy fasta	PTGIS	chr20	49498874	49573137