JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PTGIS_chr20_49498874_49573137	0/0	t0029	4072	2	2	0	0	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	t0030	4069	2	1	0	1	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	t0031	4070	2	2	0	0	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	t0032	4086	1	0	0	1	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	t0033	4104	1	0	1	0	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	t0034	4104	1	1	0	0	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	t0035	4105	1	1	0	0	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	t0036	4099	1	1	0	0	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	t0037	4099	1	1	0	0	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	t0038	4095	1	0	0	1	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	t0039	4096	1	1	0	0	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	t0040	4087	1	1	0	0	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	t0041	4090	1	0	1	0	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	t0042	4089	1	1	0	0	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	t0043	4087	1	0	0	1	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	t0044	4086	1	0	0	1	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	t0045	4086	1	0	0	0	0	1	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	t0046	4085	1	1	0	0	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	t0047	4086	1	0	0	1	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	t0048	4087	1	0	1	0	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	t0049	4085	1	0	0	1	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	t0050	4086	1	0	0	1	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	t0051	4087	1	0	0	1	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	t0052	4087	1	0	0	1	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	t0053	4086	1	0	0	0	1	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	t0054	4088	1	0	0	0	1	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	t0055	4089	1	1	0	0	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	t0056	4086	1	0	0	0	0	1	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	t0057	4078	1	1	0	0	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	t0058	4080	1	1	0	0	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	t0059	4081	1	1	0	0	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	t0060	4077	1	1	0	0	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	t0061	4080	1	0	0	0	0	1	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	t0062	4080	1	1	0	0	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	t0063	4078	1	1	0	0	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	t0064	4077	1	1	0	0	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	t0065	4073	1	1	0	0	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	t0066	4071	1	1	0	0	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	t0067	4072	1	1	0	0	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	t0068	4072	1	1	0	0	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	t0069	4072	1	1	0	0	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	t0070	4070	1	1	0	0	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	t0071	4068	1	0	0	1	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	t0072	4068	1	0	0	1	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	t0073	4067	1	0	0	1	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	t0074	4068	1	1	0	0	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	t0075	4068	1	0	0	1	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	t0076	4068	1	0	0	1	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	t0077	4069	1	0	0	1	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	t0078	4068	1	0	0	1	0	0	copy fasta	PTGIS	chr20	49498874	49573137