JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PTGIS_chr20_49498874_49573137	0/0	t0079	4071	1	0	0	1	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	t0080	4071	1	0	1	0	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	t0081	4072	1	1	0	0	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	t0082	4070	1	0	1	0	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	t0083	4070	1	0	0	1	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	t0084	4071	1	1	0	0	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	t0085	4087	1	0	0	1	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGR1_chr9_111557567_111604647	1/0	t0001	610	242	36	47	129	8	21	copy fasta	PTGR1	chr9	111557567	111604647
PTGR1_chr9_111557567_111604647	0/1	t0002	610	142	56	27	30	6	22	copy fasta	PTGR1	chr9	111557567	111604647
PTGR1_chr9_111557567_111604647	0/0	t0003	610	19	0	0	18	0	1	copy fasta	PTGR1	chr9	111557567	111604647
PTGR1_chr9_111557567_111604647	0/0	t0004	610	5	0	0	5	0	0	copy fasta	PTGR1	chr9	111557567	111604647
PTGR2_chr14_73846831_73890726	1/1	t0001	1710	136	41	17	64	6	6	copy fasta	PTGR2	chr14	73846831	73890726
PTGR2_chr14_73846831_73890726	0/0	t0002	1710	85	5	9	59	2	10	copy fasta	PTGR2	chr14	73846831	73890726
PTGR2_chr14_73846831_73890726	0/0	t0003	1710	71	18	19	17	7	10	copy fasta	PTGR2	chr14	73846831	73890726
PTGR2_chr14_73846831_73890726	0/0	t0004	1710	49	15	4	18	1	11	copy fasta	PTGR2	chr14	73846831	73890726
PTGR2_chr14_73846831_73890726	0/0	t0005	1710	41	0	22	11	2	6	copy fasta	PTGR2	chr14	73846831	73890726
PTGR2_chr14_73846831_73890726	0/0	t0006	1710	9	0	2	7	0	0	copy fasta	PTGR2	chr14	73846831	73890726
PTGR2_chr14_73846831_73890726	0/0	t0007	1711	8	6	2	0	0	0	copy fasta	PTGR2	chr14	73846831	73890726
PTGR2_chr14_73846831_73890726	0/0	t0008	1710	8	0	0	8	0	0	copy fasta	PTGR2	chr14	73846831	73890726
PTGR2_chr14_73846831_73890726	0/0	t0009	1710	2	2	0	0	0	0	copy fasta	PTGR2	chr14	73846831	73890726
PTGR2_chr14_73846831_73890726	0/0	t0010	1710	1	0	1	0	0	0	copy fasta	PTGR2	chr14	73846831	73890726
PTGR2_chr14_73846831_73890726	0/0	t0011	1710	1	1	0	0	0	0	copy fasta	PTGR2	chr14	73846831	73890726
PTGR2_chr14_73846831_73890726	0/0	t0012	1710	1	0	1	0	0	0	copy fasta	PTGR2	chr14	73846831	73890726
PTGR2_chr14_73846831_73890726	0/0	t0013	1710	1	1	0	0	0	0	copy fasta	PTGR2	chr14	73846831	73890726
PTGR2_chr14_73846831_73890726	0/0	t0014	1710	1	1	0	0	0	0	copy fasta	PTGR2	chr14	73846831	73890726
PTGR2_chr14_73846831_73890726	0/0	t0015	1710	1	1	0	0	0	0	copy fasta	PTGR2	chr14	73846831	73890726
PTGR2_chr14_73846831_73890726	0/0	t0016	1710	1	0	1	0	0	0	copy fasta	PTGR2	chr14	73846831	73890726
PTGR2_chr14_73846831_73890726	0/0	t0017	1710	1	0	0	0	0	1	copy fasta	PTGR2	chr14	73846831	73890726
PTGR2_chr14_73846831_73890726	0/0	t0018	1710	1	1	0	0	0	0	copy fasta	PTGR2	chr14	73846831	73890726
PTGR2_chr14_73846831_73890726	0/0	t0019	1710	1	1	0	0	0	0	copy fasta	PTGR2	chr14	73846831	73890726
PTGR2_chr14_73846831_73890726	0/0	t0020	1710	1	1	0	0	0	0	copy fasta	PTGR2	chr14	73846831	73890726
PTGR3_chr18_75190113_75214139	1/1	t0001	6385	129	8	25	75	3	16	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	t0002	6385	107	6	20	66	5	10	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	t0003	6386	20	2	4	11	0	3	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	t0004	6384	15	0	0	13	1	1	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	t0005	6384	12	12	0	0	0	0	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	t0006	6386	11	0	3	7	1	0	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	t0007	6385	8	8	0	0	0	0	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	t0008	6385	6	0	2	3	0	1	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	t0009	6394	5	5	0	0	0	0	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	t0010	6393	5	1	2	0	0	2	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	t0011	6386	5	2	2	0	0	1	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	t0012	6383	5	5	0	0	0	0	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	t0013	6384	5	0	3	2	0	0	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	t0014	6389	4	3	1	0	0	0	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	t0015	6386	4	4	0	0	0	0	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	t0016	6386	4	1	3	0	0	0	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	t0017	6380	4	0	0	0	0	4	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	t0018	6384	4	1	0	2	0	1	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	t0019	6387	3	1	0	1	0	1	copy fasta	PTGR3	chr18	75190113	75214139