JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PTGR3_chr18_75190113_75214139	0/0	t0020	6384	3	0	0	3	0	0	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	t0021	6388	3	2	1	0	0	0	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	t0022	6385	3	3	0	0	0	0	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	t0023	6386	3	2	1	0	0	0	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	t0024	6385	3	0	0	0	0	3	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	t0025	6383	3	0	0	3	0	0	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	t0026	6385	2	1	1	0	0	0	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	t0027	6384	2	2	0	0	0	0	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	t0028	6388	2	2	0	0	0	0	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	t0029	6385	2	2	0	0	0	0	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	t0030	6384	2	0	0	2	0	0	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	t0031	6387	2	1	0	1	0	0	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	t0032	6384	2	0	0	2	0	0	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	t0033	6383	2	1	1	0	0	0	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	t0034	6386	2	1	1	0	0	0	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	t0035	6384	2	2	0	0	0	0	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	t0036	6379	2	0	0	0	0	2	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	t0037	6383	2	2	0	0	0	0	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	t0038	6385	1	0	0	0	1	0	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	t0039	6389	1	1	0	0	0	0	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	t0040	6388	1	1	0	0	0	0	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	t0041	6385	1	0	0	1	0	0	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	t0042	6390	1	1	0	0	0	0	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	t0043	6385	1	0	0	0	0	1	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	t0044	6385	1	0	0	1	0	0	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	t0045	6375	1	0	1	0	0	0	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	t0046	6385	1	0	1	0	0	0	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	t0047	6385	1	0	0	1	0	0	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	t0048	6385	1	0	0	1	0	0	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	t0049	6393	1	1	0	0	0	0	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	t0050	6385	1	0	1	0	0	0	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	t0051	6385	1	0	0	0	0	1	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	t0052	6386	1	1	0	0	0	0	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	t0053	6386	1	1	0	0	0	0	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	t0054	6385	1	0	0	1	0	0	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	t0055	6385	1	0	1	0	0	0	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	t0056	6386	1	0	0	0	0	1	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	t0057	6384	1	1	0	0	0	0	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	t0058	6386	1	0	1	0	0	0	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	t0059	6386	1	1	0	0	0	0	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	t0060	6393	1	0	0	0	1	0	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	t0061	6380	1	0	0	0	0	1	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	t0062	6380	1	0	0	0	0	1	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	t0063	6385	1	1	0	0	0	0	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	t0064	6385	1	1	0	0	0	0	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	t0065	6385	1	0	0	0	1	0	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	t0066	6386	1	1	0	0	0	0	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	t0067	6386	1	1	0	0	0	0	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	t0068	6383	1	1	0	0	0	0	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	t0069	6384	1	1	0	0	0	0	copy fasta	PTGR3	chr18	75190113	75214139