JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PTGR3_chr18_75190113_75214139	0/0	t0070	6384	1	0	1	0	0	0	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	t0071	6385	1	0	0	0	1	0	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	t0072	6385	1	0	0	1	0	0	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	t0073	6385	1	0	0	1	0	0	copy fasta	PTGR3	chr18	75190113	75214139
PTGS1_chr9_122366024_122400703	1/1	t0001	3221	211	46	40	82	11	30	copy fasta	PTGS1	chr9	122366024	122400703
PTGS1_chr9_122366024_122400703	0/0	t0002	3221	26	24	2	0	0	0	copy fasta	PTGS1	chr9	122366024	122400703
PTGS1_chr9_122366024_122400703	0/0	t0003	3221	24	0	3	19	0	2	copy fasta	PTGS1	chr9	122366024	122400703
PTGS1_chr9_122366024_122400703	0/0	t0004	3221	19	2	5	7	1	4	copy fasta	PTGS1	chr9	122366024	122400703
PTGS1_chr9_122366024_122400703	0/0	t0005	3221	10	9	1	0	0	0	copy fasta	PTGS1	chr9	122366024	122400703
PTGS1_chr9_122366024_122400703	0/0	t0006	3221	10	0	9	1	0	0	copy fasta	PTGS1	chr9	122366024	122400703
PTGS1_chr9_122366024_122400703	0/0	t0007	3221	7	7	0	0	0	0	copy fasta	PTGS1	chr9	122366024	122400703
PTGS1_chr9_122366024_122400703	0/0	t0008	3221	3	2	1	0	0	0	copy fasta	PTGS1	chr9	122366024	122400703
PTGS1_chr9_122366024_122400703	0/0	t0009	3221	2	2	0	0	0	0	copy fasta	PTGS1	chr9	122366024	122400703
PTGS1_chr9_122366024_122400703	0/0	t0010	3221	2	1	1	0	0	0	copy fasta	PTGS1	chr9	122366024	122400703
PTGS1_chr9_122366024_122400703	0/0	t0011	3221	2	0	2	0	0	0	copy fasta	PTGS1	chr9	122366024	122400703
PTGS1_chr9_122366024_122400703	0/0	t0012	3221	2	2	0	0	0	0	copy fasta	PTGS1	chr9	122366024	122400703
PTGS1_chr9_122366024_122400703	0/0	t0013	3221	1	1	0	0	0	0	copy fasta	PTGS1	chr9	122366024	122400703
PTGS1_chr9_122366024_122400703	0/0	t0014	3221	1	0	0	1	0	0	copy fasta	PTGS1	chr9	122366024	122400703
PTGS1_chr9_122366024_122400703	0/0	t0015	3221	1	0	0	1	0	0	copy fasta	PTGS1	chr9	122366024	122400703
PTGS1_chr9_122366024_122400703	0/0	t0016	3221	1	0	0	1	0	0	copy fasta	PTGS1	chr9	122366024	122400703
PTGS1_chr9_122366024_122400703	0/0	t0017	3221	1	0	0	1	0	0	copy fasta	PTGS1	chr9	122366024	122400703
PTGS1_chr9_122366024_122400703	0/0	t0018	3221	1	0	0	0	0	1	copy fasta	PTGS1	chr9	122366024	122400703
PTGS1_chr9_122366024_122400703	0/0	t0019	3221	1	0	0	0	0	1	copy fasta	PTGS1	chr9	122366024	122400703
PTGS1_chr9_122366024_122400703	0/0	t0020	3221	1	1	0	0	0	0	copy fasta	PTGS1	chr9	122366024	122400703
PTGS1_chr9_122366024_122400703	0/0	t0021	3221	1	1	0	0	0	0	copy fasta	PTGS1	chr9	122366024	122400703
PTGS1_chr9_122366024_122400703	0/0	t0022	3221	1	0	0	1	0	0	copy fasta	PTGS1	chr9	122366024	122400703
PTGS1_chr9_122366024_122400703	0/0	t0023	3221	1	1	0	0	0	0	copy fasta	PTGS1	chr9	122366024	122400703
PTGS1_chr9_122366024_122400703	0/0	t0024	3221	1	0	0	1	0	0	copy fasta	PTGS1	chr9	122366024	122400703
PTGS1_chr9_122366024_122400703	0/0	t0025	3221	1	0	0	1	0	0	copy fasta	PTGS1	chr9	122366024	122400703
PTGS1_chr9_122366024_122400703	0/0	t0026	3221	1	1	0	0	0	0	copy fasta	PTGS1	chr9	122366024	122400703
PTGS2_chr1_186666791_186685423	0/1	t0001	2696	203	21	48	100	11	22	copy fasta	PTGS2	chr1	186666791	186685423
PTGS2_chr1_186666791_186685423	0/0	t0002	2696	57	2	9	37	3	6	copy fasta	PTGS2	chr1	186666791	186685423
PTGS2_chr1_186666791_186685423	0/0	t0003	2697	35	8	14	9	0	4	copy fasta	PTGS2	chr1	186666791	186685423
PTGS2_chr1_186666791_186685423	0/0	t0004	2691	16	15	1	0	0	0	copy fasta	PTGS2	chr1	186666791	186685423
PTGS2_chr1_186666791_186685423	0/0	t0005	2691	15	14	1	0	0	0	copy fasta	PTGS2	chr1	186666791	186685423
PTGS2_chr1_186666791_186685423	0/0	t0006	2696	13	0	0	13	0	0	copy fasta	PTGS2	chr1	186666791	186685423
PTGS2_chr1_186666791_186685423	0/0	t0007	2691	11	6	0	0	0	5	copy fasta	PTGS2	chr1	186666791	186685423
PTGS2_chr1_186666791_186685423	0/0	t0008	2695	11	0	0	11	0	0	copy fasta	PTGS2	chr1	186666791	186685423
PTGS2_chr1_186666791_186685423	0/0	t0009	2696	10	0	0	10	0	0	copy fasta	PTGS2	chr1	186666791	186685423
PTGS2_chr1_186666791_186685423	0/0	t0010	2696	5	0	0	2	0	3	copy fasta	PTGS2	chr1	186666791	186685423
PTGS2_chr1_186666791_186685423	0/0	t0011	2696	4	0	0	4	0	0	copy fasta	PTGS2	chr1	186666791	186685423
PTGS2_chr1_186666791_186685423	0/0	t0012	2691	4	4	0	0	0	0	copy fasta	PTGS2	chr1	186666791	186685423
PTGS2_chr1_186666791_186685423	1/0	t0013	2696	4	0	1	0	1	1	copy fasta	PTGS2	chr1	186666791	186685423
PTGS2_chr1_186666791_186685423	0/0	t0014	2696	4	4	0	0	0	0	copy fasta	PTGS2	chr1	186666791	186685423
PTGS2_chr1_186666791_186685423	0/0	t0015	2696	3	0	2	0	0	1	copy fasta	PTGS2	chr1	186666791	186685423
PTGS2_chr1_186666791_186685423	0/0	t0016	2691	3	3	0	0	0	0	copy fasta	PTGS2	chr1	186666791	186685423
PTGS2_chr1_186666791_186685423	0/0	t0017	2696	3	0	1	0	1	1	copy fasta	PTGS2	chr1	186666791	186685423
PTGS2_chr1_186666791_186685423	0/0	t0018	2696	3	3	0	0	0	0	copy fasta	PTGS2	chr1	186666791	186685423
PTGS2_chr1_186666791_186685423	0/0	t0019	2696	3	0	0	3	0	0	copy fasta	PTGS2	chr1	186666791	186685423
PTGS2_chr1_186666791_186685423	0/0	t0020	2696	2	2	0	0	0	0	copy fasta	PTGS2	chr1	186666791	186685423