JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PTGS2_chr1_186666791_186685423	0/0	t0021	2697	2	2	0	0	0	0	copy fasta	PTGS2	chr1	186666791	186685423
PTGS2_chr1_186666791_186685423	0/0	t0022	2696	2	2	0	0	0	0	copy fasta	PTGS2	chr1	186666791	186685423
PTGS2_chr1_186666791_186685423	0/0	t0023	2696	2	2	0	0	0	0	copy fasta	PTGS2	chr1	186666791	186685423
PTGS2_chr1_186666791_186685423	0/0	t0024	2696	2	0	2	0	0	0	copy fasta	PTGS2	chr1	186666791	186685423
PTGS2_chr1_186666791_186685423	0/0	t0025	2697	2	0	0	2	0	0	copy fasta	PTGS2	chr1	186666791	186685423
PTGS2_chr1_186666791_186685423	0/0	t0026	2696	1	1	0	0	0	0	copy fasta	PTGS2	chr1	186666791	186685423
PTGS2_chr1_186666791_186685423	0/0	t0027	2692	1	1	0	0	0	0	copy fasta	PTGS2	chr1	186666791	186685423
PTGS2_chr1_186666791_186685423	0/0	t0028	2691	1	1	0	0	0	0	copy fasta	PTGS2	chr1	186666791	186685423
PTGS2_chr1_186666791_186685423	0/0	t0029	2691	1	1	0	0	0	0	copy fasta	PTGS2	chr1	186666791	186685423
PTGS2_chr1_186666791_186685423	0/0	t0030	2696	1	1	0	0	0	0	copy fasta	PTGS2	chr1	186666791	186685423
PTGS2_chr1_186666791_186685423	0/0	t0031	2695	1	0	1	0	0	0	copy fasta	PTGS2	chr1	186666791	186685423
PTGS2_chr1_186666791_186685423	0/0	t0032	2695	1	0	0	1	0	0	copy fasta	PTGS2	chr1	186666791	186685423
PTGS2_chr1_186666791_186685423	0/0	t0033	2696	1	0	0	1	0	0	copy fasta	PTGS2	chr1	186666791	186685423
PTGS2_chr1_186666791_186685423	0/0	t0034	2696	1	1	0	0	0	0	copy fasta	PTGS2	chr1	186666791	186685423
PTGS2_chr1_186666791_186685423	0/0	t0035	2696	1	0	0	1	0	0	copy fasta	PTGS2	chr1	186666791	186685423
PTGS2_chr1_186666791_186685423	0/0	t0036	2696	1	0	0	1	0	0	copy fasta	PTGS2	chr1	186666791	186685423
PTGS2_chr1_186666791_186685423	0/0	t0037	2697	1	0	0	0	0	1	copy fasta	PTGS2	chr1	186666791	186685423
PTGS2_chr1_186666791_186685423	0/0	t0038	2684	1	0	0	1	0	0	copy fasta	PTGS2	chr1	186666791	186685423
PTGS2_chr1_186666791_186685423	0/0	t0039	2696	1	0	0	1	0	0	copy fasta	PTGS2	chr1	186666791	186685423
PTGS2_chr1_186666791_186685423	0/0	t0040	2696	1	0	0	1	0	0	copy fasta	PTGS2	chr1	186666791	186685423
PTH1R_chr3_46872721_46908799	1/0	t0001	372	299	90	47	122	11	28	copy fasta	PTH1R	chr3	46872721	46908799
PTH1R_chr3_46872721_46908799	0/1	t0002	373	56	1	19	20	3	12	copy fasta	PTH1R	chr3	46872721	46908799
PTH1R_chr3_46872721_46908799	0/0	t0003	372	1	1	0	0	0	0	copy fasta	PTH1R	chr3	46872721	46908799
PTH2R_chr2_208401792_208499506	0/1	t0001	1101	126	19	15	69	6	16	copy fasta	PTH2R	chr2	208401792	208499506
PTH2R_chr2_208401792_208499506	1/0	t0002	1100	87	14	8	48	3	13	copy fasta	PTH2R	chr2	208401792	208499506
PTH2R_chr2_208401792_208499506	0/0	t0003	1100	67	39	9	10	3	6	copy fasta	PTH2R	chr2	208401792	208499506
PTH2R_chr2_208401792_208499506	0/0	t0004	1100	6	6	0	0	0	0	copy fasta	PTH2R	chr2	208401792	208499506
PTH2R_chr2_208401792_208499506	0/0	t0005	1100	3	3	0	0	0	0	copy fasta	PTH2R	chr2	208401792	208499506
PTH2R_chr2_208401792_208499506	0/0	t0006	1100	1	0	0	0	0	1	copy fasta	PTH2R	chr2	208401792	208499506
PTH2R_chr2_208401792_208499506	0/0	t0007	1101	1	0	0	1	0	0	copy fasta	PTH2R	chr2	208401792	208499506
PTH2R_chr2_208401792_208499506	0/0	t0008	1100	1	1	0	0	0	0	copy fasta	PTH2R	chr2	208401792	208499506
PTH2R_chr2_208401792_208499506	0/0	t0009	1100	1	1	0	0	0	0	copy fasta	PTH2R	chr2	208401792	208499506
PTH2R_chr2_208401792_208499506	0/0	t0010	1101	1	1	0	0	0	0	copy fasta	PTH2R	chr2	208401792	208499506
PTH2_chr19_49417419_49428441	1/1	t0001	152	444	90	80	206	16	50	copy fasta	PTH2	chr19	49417419	49428441
PTHLH_chr12_27953084_27977733	0/1	t0001	1046	176	36	18	102	4	15	copy fasta	PTHLH	chr12	27953084	27977733
PTHLH_chr12_27953084_27977733	1/0	t0002	1045	166	6	39	97	6	17	copy fasta	PTHLH	chr12	27953084	27977733
PTHLH_chr12_27953084_27977733	0/0	t0003	1046	36	3	5	24	0	4	copy fasta	PTHLH	chr12	27953084	27977733
PTHLH_chr12_27953084_27977733	0/0	t0004	1046	28	9	11	0	4	4	copy fasta	PTHLH	chr12	27953084	27977733
PTHLH_chr12_27953084_27977733	0/0	t0005	1045	17	15	1	0	0	1	copy fasta	PTHLH	chr12	27953084	27977733
PTHLH_chr12_27953084_27977733	0/0	t0006	1046	7	6	1	0	0	0	copy fasta	PTHLH	chr12	27953084	27977733
PTHLH_chr12_27953084_27977733	0/0	t0007	1046	7	6	1	0	0	0	copy fasta	PTHLH	chr12	27953084	27977733
PTHLH_chr12_27953084_27977733	0/0	t0008	1047	7	7	0	0	0	0	copy fasta	PTHLH	chr12	27953084	27977733
PTHLH_chr12_27953084_27977733	0/0	t0009	1046	4	4	0	0	0	0	copy fasta	PTHLH	chr12	27953084	27977733
PTHLH_chr12_27953084_27977733	0/0	t0010	1046	4	0	0	4	0	0	copy fasta	PTHLH	chr12	27953084	27977733
PTHLH_chr12_27953084_27977733	0/0	t0011	1032	1	0	0	1	0	0	copy fasta	PTHLH	chr12	27953084	27977733
PTHLH_chr12_27953084_27977733	0/0	t0012	1045	1	0	0	0	0	1	copy fasta	PTHLH	chr12	27953084	27977733
PTHLH_chr12_27953084_27977733	0/0	t0013	1046	1	1	0	0	0	0	copy fasta	PTHLH	chr12	27953084	27977733
PTHLH_chr12_27953084_27977733	0/0	t0014	1046	1	1	0	0	0	0	copy fasta	PTHLH	chr12	27953084	27977733
PTH_chr11_13487054_13500997	1/1	t0001	444	413	83	70	194	18	46	copy fasta	PTH	chr11	13487054	13500997
PTH_chr11_13487054_13500997	0/0	t0002	442	11	11	0	0	0	0	copy fasta	PTH	chr11	13487054	13500997