JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PTK2B_chr8_27320552_27464386	1/0	t0001	1045	115	23	21	61	3	6	copy fasta	PTK2B	chr8	27320552	27464386
PTK2B_chr8_27320552_27464386	0/1	t0002	1045	103	14	24	50	4	10	copy fasta	PTK2B	chr8	27320552	27464386
PTK2B_chr8_27320552_27464386	0/0	t0003	1045	102	54	22	18	3	5	copy fasta	PTK2B	chr8	27320552	27464386
PTK2B_chr8_27320552_27464386	0/0	t0004	1045	6	1	4	0	0	1	copy fasta	PTK2B	chr8	27320552	27464386
PTK2B_chr8_27320552_27464386	0/0	t0005	1045	1	0	1	0	0	0	copy fasta	PTK2B	chr8	27320552	27464386
PTK2B_chr8_27320552_27464386	0/0	t0006	1045	1	0	0	1	0	0	copy fasta	PTK2B	chr8	27320552	27464386
PTK2_chr8_140652900_141006282	1/0	t0001	1846	168	58	28	57	5	19	copy fasta	PTK2	chr8	140652900	141006282
PTK2_chr8_140652900_141006282	0/0	t0002	1846	89	7	22	46	3	11	copy fasta	PTK2	chr8	140652900	141006282
PTK2_chr8_140652900_141006282	0/0	t0003	1846	6	6	0	0	0	0	copy fasta	PTK2	chr8	140652900	141006282
PTK2_chr8_140652900_141006282	0/0	t0004	1846	5	5	0	0	0	0	copy fasta	PTK2	chr8	140652900	141006282
PTK2_chr8_140652900_141006282	0/0	t0005	1846	3	3	0	0	0	0	copy fasta	PTK2	chr8	140652900	141006282
PTK2_chr8_140652900_141006282	0/0	t0006	1846	3	3	0	0	0	0	copy fasta	PTK2	chr8	140652900	141006282
PTK2_chr8_140652900_141006282	0/0	t0007	1852	2	2	0	0	0	0	copy fasta	PTK2	chr8	140652900	141006282
PTK2_chr8_140652900_141006282	0/0	t0008	1852	2	1	0	0	0	1	copy fasta	PTK2	chr8	140652900	141006282
PTK2_chr8_140652900_141006282	0/0	t0009	1881	1	0	0	1	0	0	copy fasta	PTK2	chr8	140652900	141006282
PTK2_chr8_140652900_141006282	0/0	t0010	1846	1	0	0	1	0	0	copy fasta	PTK2	chr8	140652900	141006282
PTK2_chr8_140652900_141006282	0/0	t0011	1846	1	0	1	0	0	0	copy fasta	PTK2	chr8	140652900	141006282
PTK2_chr8_140652900_141006282	0/1	t0012	1846	1	0	0	0	0	0	copy fasta	PTK2	chr8	140652900	141006282
PTK2_chr8_140652900_141006282	0/0	t0013	1846	1	0	0	1	0	0	copy fasta	PTK2	chr8	140652900	141006282
PTK2_chr8_140652900_141006282	0/0	t0014	1846	1	0	1	0	0	0	copy fasta	PTK2	chr8	140652900	141006282
PTK2_chr8_140652900_141006282	0/0	t0015	1846	1	0	0	1	0	0	copy fasta	PTK2	chr8	140652900	141006282
PTK2_chr8_140652900_141006282	0/0	t0016	1846	1	0	0	1	0	0	copy fasta	PTK2	chr8	140652900	141006282
PTK2_chr8_140652900_141006282	0/0	t0017	1846	1	0	1	0	0	0	copy fasta	PTK2	chr8	140652900	141006282
PTK2_chr8_140652900_141006282	0/0	t0018	1846	1	0	1	0	0	0	copy fasta	PTK2	chr8	140652900	141006282
PTK2_chr8_140652900_141006282	0/0	t0019	1846	1	0	0	0	0	1	copy fasta	PTK2	chr8	140652900	141006282
PTK2_chr8_140652900_141006282	0/0	t0020	1846	1	1	0	0	0	0	copy fasta	PTK2	chr8	140652900	141006282
PTK6_chr20_63523001_63542376	0/0	t0001	1598	137	2	30	90	5	10	copy fasta	PTK6	chr20	63523001	63542376
PTK6_chr20_63523001_63542376	1/1	t0002	1598	53	0	26	1	10	14	copy fasta	PTK6	chr20	63523001	63542376
PTK6_chr20_63523001_63542376	0/0	t0003	1598	41	38	3	0	0	0	copy fasta	PTK6	chr20	63523001	63542376
PTK6_chr20_63523001_63542376	0/0	t0004	1598	28	26	1	1	0	0	copy fasta	PTK6	chr20	63523001	63542376
PTK6_chr20_63523001_63542376	0/0	t0005	1596	14	0	0	0	0	14	copy fasta	PTK6	chr20	63523001	63542376
PTK6_chr20_63523001_63542376	0/0	t0006	1598	13	0	9	0	1	3	copy fasta	PTK6	chr20	63523001	63542376
PTK6_chr20_63523001_63542376	0/0	t0007	1598	7	0	0	7	0	0	copy fasta	PTK6	chr20	63523001	63542376
PTK6_chr20_63523001_63542376	0/0	t0008	1598	5	0	0	5	0	0	copy fasta	PTK6	chr20	63523001	63542376
PTK6_chr20_63523001_63542376	0/0	t0009	1599	4	0	2	2	0	0	copy fasta	PTK6	chr20	63523001	63542376
PTK6_chr20_63523001_63542376	0/0	t0010	1597	4	0	1	0	1	2	copy fasta	PTK6	chr20	63523001	63542376
PTK6_chr20_63523001_63542376	0/0	t0011	1597	4	4	0	0	0	0	copy fasta	PTK6	chr20	63523001	63542376
PTK6_chr20_63523001_63542376	0/0	t0012	1597	4	4	0	0	0	0	copy fasta	PTK6	chr20	63523001	63542376
PTK6_chr20_63523001_63542376	0/0	t0013	1598	3	3	0	0	0	0	copy fasta	PTK6	chr20	63523001	63542376
PTK6_chr20_63523001_63542376	0/0	t0014	1598	3	3	0	0	0	0	copy fasta	PTK6	chr20	63523001	63542376
PTK6_chr20_63523001_63542376	0/0	t0015	1599	2	0	0	2	0	0	copy fasta	PTK6	chr20	63523001	63542376
PTK6_chr20_63523001_63542376	0/0	t0016	1597	2	0	0	2	0	0	copy fasta	PTK6	chr20	63523001	63542376
PTK6_chr20_63523001_63542376	0/0	t0017	1598	2	0	2	0	0	0	copy fasta	PTK6	chr20	63523001	63542376
PTK6_chr20_63523001_63542376	0/0	t0018	1596	1	0	1	0	0	0	copy fasta	PTK6	chr20	63523001	63542376
PTK6_chr20_63523001_63542376	0/0	t0019	1598	1	0	1	0	0	0	copy fasta	PTK6	chr20	63523001	63542376
PTK6_chr20_63523001_63542376	0/0	t0020	1598	1	1	0	0	0	0	copy fasta	PTK6	chr20	63523001	63542376
PTK6_chr20_63523001_63542376	0/0	t0021	1596	1	0	1	0	0	0	copy fasta	PTK6	chr20	63523001	63542376
PTK6_chr20_63523001_63542376	0/0	t0022	1598	1	1	0	0	0	0	copy fasta	PTK6	chr20	63523001	63542376
PTK6_chr20_63523001_63542376	0/0	t0023	1596	1	1	0	0	0	0	copy fasta	PTK6	chr20	63523001	63542376
PTK6_chr20_63523001_63542376	0/0	t0024	1599	1	1	0	0	0	0	copy fasta	PTK6	chr20	63523001	63542376