JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PTK6_chr20_63523001_63542376	0/0	t0025	1598	1	1	0	0	0	0	copy fasta	PTK6	chr20	63523001	63542376
PTK6_chr20_63523001_63542376	0/0	t0026	1598	1	0	0	0	0	1	copy fasta	PTK6	chr20	63523001	63542376
PTK6_chr20_63523001_63542376	0/0	t0027	1598	1	0	0	0	1	0	copy fasta	PTK6	chr20	63523001	63542376
PTK6_chr20_63523001_63542376	0/0	t0028	1599	1	1	0	0	0	0	copy fasta	PTK6	chr20	63523001	63542376
PTK6_chr20_63523001_63542376	0/0	t0029	1597	1	1	0	0	0	0	copy fasta	PTK6	chr20	63523001	63542376
PTK6_chr20_63523001_63542376	0/0	t0030	1598	1	1	0	0	0	0	copy fasta	PTK6	chr20	63523001	63542376
PTK6_chr20_63523001_63542376	0/0	t0031	1599	1	0	1	0	0	0	copy fasta	PTK6	chr20	63523001	63542376
PTK6_chr20_63523001_63542376	0/0	t0032	1598	1	1	0	0	0	0	copy fasta	PTK6	chr20	63523001	63542376
PTK6_chr20_63523001_63542376	0/0	t0033	1598	1	1	0	0	0	0	copy fasta	PTK6	chr20	63523001	63542376
PTK6_chr20_63523001_63542376	0/0	t0034	1598	1	1	0	0	0	0	copy fasta	PTK6	chr20	63523001	63542376
PTK6_chr20_63523001_63542376	0/0	t0035	1599	1	1	0	0	0	0	copy fasta	PTK6	chr20	63523001	63542376
PTK7_chr6_43071314_43166715	1/0	t0001	1010	162	38	40	59	2	22	copy fasta	PTK7	chr6	43071314	43166715
PTK7_chr6_43071314_43166715	0/1	t0002	1010	94	29	15	41	2	6	copy fasta	PTK7	chr6	43071314	43166715
PTK7_chr6_43071314_43166715	0/0	t0003	1010	6	5	1	0	0	0	copy fasta	PTK7	chr6	43071314	43166715
PTK7_chr6_43071314_43166715	0/0	t0004	1010	4	4	0	0	0	0	copy fasta	PTK7	chr6	43071314	43166715
PTK7_chr6_43071314_43166715	0/0	t0005	1010	2	2	0	0	0	0	copy fasta	PTK7	chr6	43071314	43166715
PTK7_chr6_43071314_43166715	0/0	t0006	1010	1	1	0	0	0	0	copy fasta	PTK7	chr6	43071314	43166715
PTK7_chr6_43071314_43166715	0/0	t0007	1010	1	0	0	0	0	1	copy fasta	PTK7	chr6	43071314	43166715
PTK7_chr6_43071314_43166715	0/0	t0008	1010	1	0	0	0	0	1	copy fasta	PTK7	chr6	43071314	43166715
PTK7_chr6_43071314_43166715	0/0	t0009	1010	1	1	0	0	0	0	copy fasta	PTK7	chr6	43071314	43166715
PTMA_chr2_231703525_231718551	1/1	t0001	883	305	58	58	138	12	37	copy fasta	PTMA	chr2	231703525	231718551
PTMA_chr2_231703525_231718551	0/0	t0002	883	43	4	10	19	2	8	copy fasta	PTMA	chr2	231703525	231718551
PTMA_chr2_231703525_231718551	0/0	t0003	884	18	10	3	1	1	3	copy fasta	PTMA	chr2	231703525	231718551
PTMA_chr2_231703525_231718551	0/0	t0004	883	14	11	1	1	1	0	copy fasta	PTMA	chr2	231703525	231718551
PTMA_chr2_231703525_231718551	0/0	t0005	883	4	4	0	0	0	0	copy fasta	PTMA	chr2	231703525	231718551
PTMA_chr2_231703525_231718551	0/0	t0006	883	2	2	0	0	0	0	copy fasta	PTMA	chr2	231703525	231718551
PTMA_chr2_231703525_231718551	0/0	t0007	883	1	1	0	0	0	0	copy fasta	PTMA	chr2	231703525	231718551
PTMA_chr2_231703525_231718551	0/0	t0008	883	1	0	0	1	0	0	copy fasta	PTMA	chr2	231703525	231718551
PTMA_chr2_231703525_231718551	0/0	t0009	883	1	0	0	1	0	0	copy fasta	PTMA	chr2	231703525	231718551
PTMA_chr2_231703525_231718551	0/0	t0010	883	1	1	0	0	0	0	copy fasta	PTMA	chr2	231703525	231718551
PTMA_chr2_231703525_231718551	0/0	t0011	883	1	0	0	1	0	0	copy fasta	PTMA	chr2	231703525	231718551
PTMA_chr2_231703525_231718551	0/0	t0012	883	1	1	0	0	0	0	copy fasta	PTMA	chr2	231703525	231718551
PTMS_chr12_6761363_6775952	1/1	t0001	854	436	81	84	209	16	44	copy fasta	PTMS	chr12	6761363	6775952
PTMS_chr12_6761363_6775952	0/0	t0002	855	12	12	0	0	0	0	copy fasta	PTMS	chr12	6761363	6775952
PTMS_chr12_6761363_6775952	0/0	t0003	854	1	1	0	0	0	0	copy fasta	PTMS	chr12	6761363	6775952
PTMS_chr12_6761363_6775952	0/0	t0004	854	1	0	0	1	0	0	copy fasta	PTMS	chr12	6761363	6775952
PTMS_chr12_6761363_6775952	0/0	t0005	854	1	0	0	1	0	0	copy fasta	PTMS	chr12	6761363	6775952
PTMS_chr12_6761363_6775952	0/0	t0006	854	1	0	0	1	0	0	copy fasta	PTMS	chr12	6761363	6775952
PTN_chr7_137222341_137348733	1/1	t0001	975	254	63	46	106	9	28	copy fasta	PTN	chr7	137222341	137348733
PTN_chr7_137222341_137348733	0/0	t0002	973	37	23	3	6	1	4	copy fasta	PTN	chr7	137222341	137348733
PTN_chr7_137222341_137348733	0/0	t0003	974	3	1	1	0	0	1	copy fasta	PTN	chr7	137222341	137348733
PTN_chr7_137222341_137348733	0/0	t0004	975	1	0	0	0	0	1	copy fasta	PTN	chr7	137222341	137348733
PTN_chr7_137222341_137348733	0/0	t0005	975	1	1	0	0	0	0	copy fasta	PTN	chr7	137222341	137348733
PTOV1_chr19_49846159_49865742	1/1	t0001	634	415	96	74	186	12	45	copy fasta	PTOV1	chr19	49846159	49865742
PTOV1_chr19_49846159_49865742	0/0	t0002	634	3	0	0	0	0	3	copy fasta	PTOV1	chr19	49846159	49865742
PTOV1_chr19_49846159_49865742	0/0	t0003	634	2	0	0	2	0	0	copy fasta	PTOV1	chr19	49846159	49865742
PTOV1_chr19_49846159_49865742	0/0	t0004	634	2	0	2	0	0	0	copy fasta	PTOV1	chr19	49846159	49865742
PTOV1_chr19_49846159_49865742	0/0	t0005	634	1	1	0	0	0	0	copy fasta	PTOV1	chr19	49846159	49865742
PTOV1_chr19_49846159_49865742	0/0	t0006	634	1	1	0	0	0	0	copy fasta	PTOV1	chr19	49846159	49865742
PTOV1_chr19_49846159_49865742	0/0	t0007	634	1	0	0	1	0	0	copy fasta	PTOV1	chr19	49846159	49865742