JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PTP4A2_chr1_31901421_31943368	0/0	t0011	3367	4	0	2	2	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0012	3361	4	1	0	3	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0013	3359	4	0	0	2	0	2	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0014	3314	4	2	1	1	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0015	3348	3	3	0	0	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0016	3382	3	0	1	0	0	2	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0017	3398	3	1	1	1	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0018	3405	3	0	2	1	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0019	3395	3	0	0	2	1	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0020	3369	3	1	0	0	0	2	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0021	3365	3	0	0	3	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0022	3363	3	3	0	0	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0023	3313	3	2	0	0	0	1	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0024	3310	3	3	0	0	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0025	3321	2	0	2	0	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0026	3405	2	2	0	0	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0027	3372	2	2	0	0	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0028	3350	2	2	0	0	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0029	3338	2	2	0	0	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0030	3308	2	0	2	0	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0031	3375	2	0	1	1	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0032	3406	2	2	0	0	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0033	3368	2	0	0	2	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0034	3376	2	0	0	2	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0035	3378	2	0	0	1	0	1	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0036	3382	2	0	0	2	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0037	3394	2	0	0	2	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	1/0	t0038	3407	2	0	0	0	0	1	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0039	3402	2	0	0	0	0	2	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0040	3418	2	0	2	0	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0041	3393	2	0	0	1	0	1	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0042	3387	2	1	0	1	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0043	3389	2	1	0	0	0	1	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0044	3381	2	0	0	1	0	1	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0045	3379	2	0	0	2	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0046	3367	2	0	1	0	0	1	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0047	3343	2	2	0	0	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0048	3343	2	0	1	1	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0049	3351	2	0	2	0	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0050	3395	2	0	0	2	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0051	3386	2	0	0	0	2	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0052	3382	1	1	0	0	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0053	3374	1	1	0	0	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0054	3370	1	1	0	0	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0055	3346	1	1	0	0	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0056	3312	1	0	0	1	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0057	3375	1	1	0	0	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0058	3369	1	1	0	0	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0059	3403	1	1	0	0	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0060	3405	1	1	0	0	0	0	copy fasta	PTP4A2	chr1	31901421	31943368