Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ATP9A_chr20_51591514_51773390	0/0	t0008	4721	11	8	1	1	1	0	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	t0009	4717	10	7	1	0	0	2	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	t0010	4715	9	6	0	3	0	0	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	t0011	4722	8	1	1	6	0	0	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	t0012	4722	7	7	0	0	0	0	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	t0013	4717	7	6	1	0	0	0	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	t0014	4722	6	6	0	0	0	0	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	t0015	4718	5	5	0	0	0	0	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	t0016	4720	4	3	1	0	0	0	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	t0017	4726	3	0	0	3	0	0	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	t0018	4730	3	0	1	1	0	1	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	t0019	4726	3	0	3	0	0	0	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	t0020	4715	3	0	1	0	1	1	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	t0021	4713	3	0	1	0	0	2	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	t0022	4721	3	0	1	2	0	0	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	t0023	4719	3	0	1	2	0	0	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	t0024	4719	3	2	1	0	0	0	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	t0025	4715	3	3	0	0	0	0	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	t0026	4728	2	0	1	1	0	0	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	t0027	4721	2	1	1	0	0	0	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	t0028	4719	2	0	1	0	1	0	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	t0029	4723	2	1	0	0	1	0	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	t0030	4720	2	0	0	2	0	0	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	t0031	4720	2	2	0	0	0	0	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	t0032	4716	2	2	0	0	0	0	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	t0033	4728	1	0	1	0	0	0	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	t0034	4712	1	1	0	0	0	0	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	t0035	4728	1	0	1	0	0	0	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	t0036	4730	1	1	0	0	0	0	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	t0037	4728	1	0	0	0	0	1	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	t0038	4727	1	0	0	1	0	0	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	t0039	4728	1	1	0	0	0	0	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	t0040	4726	1	0	0	1	0	0	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	t0041	4726	1	0	0	0	0	1	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	t0042	4726	1	0	1	0	0	0	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	t0043	4726	1	1	0	0	0	0	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	t0044	4726	1	0	0	0	0	1	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	t0045	4726	1	0	0	0	0	1	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	t0046	4722	1	1	0	0	0	0	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	t0047	4724	1	1	0	0	0	0	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	t0048	4724	1	1	0	0	0	0	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	t0049	4724	1	1	0	0	0	0	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	t0050	4725	1	1	0	0	0	0	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	t0051	4720	1	1	0	0	0	0	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	t0052	4722	1	1	0	0	0	0	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	t0053	4722	1	1	0	0	0	0	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	t0054	4722	1	1	0	0	0	0	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	t0055	4722	1	0	0	1	0	0	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	t0056	4720	1	1	0	0	0	0	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	t0057	4720	1	1	0	0	0	0	copy fasta	ATP9A	chr20	51591514	51773390