JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PTP4A2_chr1_31901421_31943368	0/0	t0061	3409	1	1	0	0	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0062	3402	1	1	0	0	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0063	3404	1	0	1	0	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0064	3388	1	1	0	0	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0065	3382	1	1	0	0	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0066	3382	1	1	0	0	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0067	3376	1	1	0	0	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0068	3374	1	1	0	0	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0069	3371	1	1	0	0	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0070	3372	1	1	0	0	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0071	3352	1	1	0	0	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0072	3344	1	1	0	0	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0073	3309	1	0	0	0	0	1	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0074	3375	1	1	0	0	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0075	3355	1	0	1	0	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0076	3351	1	0	0	0	0	1	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0077	3389	1	1	0	0	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0078	3400	1	0	0	1	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0079	3379	1	0	1	0	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0080	3374	1	0	1	0	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0081	3371	1	0	1	0	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0082	3366	1	0	0	0	1	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0083	3360	1	0	0	1	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0084	3360	1	0	0	1	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0085	3400	1	1	0	0	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0086	3407	1	1	0	0	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0087	3404	1	1	0	0	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0088	3408	1	1	0	0	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0089	3398	1	1	0	0	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0090	3408	1	1	0	0	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0091	3398	1	0	0	1	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0092	3405	1	0	0	1	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0093	3352	1	0	0	1	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0094	3354	1	0	1	0	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0095	3409	1	1	0	0	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0096	3354	1	0	0	0	0	1	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0097	3358	1	0	1	0	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0098	3376	1	0	0	1	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0099	3370	1	0	0	1	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0100	3374	1	0	0	1	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0101	3378	1	0	0	1	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0102	3380	1	0	0	1	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0103	3380	1	0	0	1	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0104	3380	1	0	0	0	0	1	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0105	3380	1	0	0	0	1	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0106	3384	1	1	0	0	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0107	3398	1	0	0	0	0	1	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0108	3390	1	0	0	1	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0109	3390	1	1	0	0	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0110	3386	1	0	1	0	0	0	copy fasta	PTP4A2	chr1	31901421	31943368