JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PTP4A2_chr1_31901421_31943368	0/0	t0111	3390	1	0	0	0	0	1	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0112	3390	1	1	0	0	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0113	3388	1	0	1	0	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0114	3396	1	0	0	1	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0115	3394	1	0	0	1	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0116	3396	1	1	0	0	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0117	3405	1	0	0	1	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0118	3406	1	0	0	1	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0119	3400	1	0	0	1	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0120	3405	1	0	1	0	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0121	3404	1	0	1	0	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0122	3447	1	1	0	0	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0123	3426	1	1	0	0	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0124	3405	1	1	0	0	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0125	3399	1	0	0	0	1	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0126	3397	1	1	0	0	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0127	3399	1	0	0	1	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0128	3388	1	0	0	1	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0129	3389	1	0	0	1	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0130	3389	1	0	0	0	1	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0131	3385	1	0	1	0	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0132	3383	1	0	1	0	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0133	3386	1	0	0	1	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0134	3375	1	1	0	0	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0135	3373	1	0	0	1	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0136	3375	1	0	0	0	0	1	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0137	3371	1	0	0	1	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0138	3373	1	1	0	0	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0139	3363	1	0	1	0	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0140	3363	1	1	0	0	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0141	3365	1	0	0	1	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0142	3367	1	1	0	0	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0143	3357	1	0	0	0	0	1	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0144	3411	1	1	0	0	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0145	3431	1	0	1	0	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0146	3455	1	0	1	0	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0147	3355	1	0	0	1	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0148	3347	1	1	0	0	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0149	3353	1	0	0	1	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0150	3345	1	1	0	0	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0151	3347	1	0	0	0	0	1	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0152	3345	1	0	0	1	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0153	3379	1	0	0	1	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0154	3335	1	1	0	0	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0155	3349	1	0	1	0	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0156	3399	1	0	0	1	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0157	3397	1	0	0	1	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0158	3327	1	1	0	0	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/1	t0159	3382	1	0	0	0	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0160	3392	1	0	1	0	0	0	copy fasta	PTP4A2	chr1	31901421	31943368