JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PTP4A2_chr1_31901421_31943368	0/0	t0161	3353	1	0	1	0	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0162	3309	1	0	1	0	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0163	3371	1	0	0	0	1	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0164	3367	1	0	0	1	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0165	3406	1	0	0	1	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0166	3312	1	0	0	1	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0167	3312	1	1	0	0	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0168	3438	1	0	0	1	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0169	3440	1	0	0	1	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A2_chr1_31901421_31943368	0/0	t0170	3444	1	0	0	1	0	0	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A3_chr8_141387021_141437454	0/0	t0001	2328	126	33	25	43	5	20	copy fasta	PTP4A3	chr8	141387021	141437454
PTP4A3_chr8_141387021_141437454	0/1	t0002	2328	85	11	28	37	2	6	copy fasta	PTP4A3	chr8	141387021	141437454
PTP4A3_chr8_141387021_141437454	0/0	t0003	2328	27	1	3	19	1	3	copy fasta	PTP4A3	chr8	141387021	141437454
PTP4A3_chr8_141387021_141437454	0/0	t0004	2328	11	0	3	6	0	2	copy fasta	PTP4A3	chr8	141387021	141437454
PTP4A3_chr8_141387021_141437454	0/0	t0005	2328	8	0	1	5	2	0	copy fasta	PTP4A3	chr8	141387021	141437454
PTP4A3_chr8_141387021_141437454	0/0	t0006	2328	7	2	0	5	0	0	copy fasta	PTP4A3	chr8	141387021	141437454
PTP4A3_chr8_141387021_141437454	0/0	t0007	2328	6	6	0	0	0	0	copy fasta	PTP4A3	chr8	141387021	141437454
PTP4A3_chr8_141387021_141437454	0/0	t0008	2328	6	6	0	0	0	0	copy fasta	PTP4A3	chr8	141387021	141437454
PTP4A3_chr8_141387021_141437454	0/0	t0009	2328	3	2	1	0	0	0	copy fasta	PTP4A3	chr8	141387021	141437454
PTP4A3_chr8_141387021_141437454	0/0	t0010	2328	3	0	2	0	1	0	copy fasta	PTP4A3	chr8	141387021	141437454
PTP4A3_chr8_141387021_141437454	0/0	t0011	2328	2	2	0	0	0	0	copy fasta	PTP4A3	chr8	141387021	141437454
PTP4A3_chr8_141387021_141437454	0/0	t0012	2328	2	2	0	0	0	0	copy fasta	PTP4A3	chr8	141387021	141437454
PTP4A3_chr8_141387021_141437454	0/0	t0013	2328	2	0	2	0	0	0	copy fasta	PTP4A3	chr8	141387021	141437454
PTP4A3_chr8_141387021_141437454	0/0	t0014	2328	2	2	0	0	0	0	copy fasta	PTP4A3	chr8	141387021	141437454
PTP4A3_chr8_141387021_141437454	0/0	t0015	2328	2	0	0	2	0	0	copy fasta	PTP4A3	chr8	141387021	141437454
PTP4A3_chr8_141387021_141437454	0/0	t0016	2328	2	0	0	1	0	1	copy fasta	PTP4A3	chr8	141387021	141437454
PTP4A3_chr8_141387021_141437454	0/0	t0017	2328	2	2	0	0	0	0	copy fasta	PTP4A3	chr8	141387021	141437454
PTP4A3_chr8_141387021_141437454	0/0	t0018	2328	2	2	0	0	0	0	copy fasta	PTP4A3	chr8	141387021	141437454
PTP4A3_chr8_141387021_141437454	0/0	t0019	2328	2	2	0	0	0	0	copy fasta	PTP4A3	chr8	141387021	141437454
PTP4A3_chr8_141387021_141437454	0/0	t0020	2328	2	0	0	0	0	2	copy fasta	PTP4A3	chr8	141387021	141437454
PTP4A3_chr8_141387021_141437454	0/0	t0021	2328	2	0	1	0	0	1	copy fasta	PTP4A3	chr8	141387021	141437454
PTP4A3_chr8_141387021_141437454	0/0	t0022	2328	2	0	1	1	0	0	copy fasta	PTP4A3	chr8	141387021	141437454
PTP4A3_chr8_141387021_141437454	0/0	t0023	2328	1	1	0	0	0	0	copy fasta	PTP4A3	chr8	141387021	141437454
PTP4A3_chr8_141387021_141437454	0/0	t0024	2328	1	0	1	0	0	0	copy fasta	PTP4A3	chr8	141387021	141437454
PTP4A3_chr8_141387021_141437454	0/0	t0025	2328	1	1	0	0	0	0	copy fasta	PTP4A3	chr8	141387021	141437454
PTP4A3_chr8_141387021_141437454	0/0	t0026	2328	1	1	0	0	0	0	copy fasta	PTP4A3	chr8	141387021	141437454
PTP4A3_chr8_141387021_141437454	0/0	t0027	2328	1	1	0	0	0	0	copy fasta	PTP4A3	chr8	141387021	141437454
PTP4A3_chr8_141387021_141437454	0/0	t0028	2328	1	1	0	0	0	0	copy fasta	PTP4A3	chr8	141387021	141437454
PTP4A3_chr8_141387021_141437454	0/0	t0029	2328	1	1	0	0	0	0	copy fasta	PTP4A3	chr8	141387021	141437454
PTP4A3_chr8_141387021_141437454	0/0	t0030	2328	1	0	0	0	0	1	copy fasta	PTP4A3	chr8	141387021	141437454
PTP4A3_chr8_141387021_141437454	0/0	t0031	2328	1	1	0	0	0	0	copy fasta	PTP4A3	chr8	141387021	141437454
PTP4A3_chr8_141387021_141437454	0/0	t0032	2328	1	0	0	0	1	0	copy fasta	PTP4A3	chr8	141387021	141437454
PTP4A3_chr8_141387021_141437454	0/0	t0033	2328	1	0	0	1	0	0	copy fasta	PTP4A3	chr8	141387021	141437454
PTP4A3_chr8_141387021_141437454	0/0	t0034	2328	1	1	0	0	0	0	copy fasta	PTP4A3	chr8	141387021	141437454
PTP4A3_chr8_141387021_141437454	0/0	t0035	2328	1	1	0	0	0	0	copy fasta	PTP4A3	chr8	141387021	141437454
PTP4A3_chr8_141387021_141437454	0/0	t0036	2328	1	0	0	1	0	0	copy fasta	PTP4A3	chr8	141387021	141437454
PTP4A3_chr8_141387021_141437454	0/0	t0037	2328	1	0	0	1	0	0	copy fasta	PTP4A3	chr8	141387021	141437454
PTP4A3_chr8_141387021_141437454	0/0	t0038	2328	1	1	0	0	0	0	copy fasta	PTP4A3	chr8	141387021	141437454
PTP4A3_chr8_141387021_141437454	0/0	t0039	2328	1	1	0	0	0	0	copy fasta	PTP4A3	chr8	141387021	141437454
PTPA_chr9_129106415_129153946	0/0	t0001	1669	134	20	25	63	8	18	copy fasta	PTPA	chr9	129106415	129153946