JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PTPA_chr9_129106415_129153946	0/1	t0002	1669	99	12	14	53	5	14	copy fasta	PTPA	chr9	129106415	129153946
PTPA_chr9_129106415_129153946	0/0	t0003	1669	40	37	3	0	0	0	copy fasta	PTPA	chr9	129106415	129153946
PTPA_chr9_129106415_129153946	0/0	t0004	1669	24	0	8	13	0	3	copy fasta	PTPA	chr9	129106415	129153946
PTPA_chr9_129106415_129153946	0/0	t0005	1667	14	12	2	0	0	0	copy fasta	PTPA	chr9	129106415	129153946
PTPA_chr9_129106415_129153946	0/0	t0006	1669	3	0	2	0	1	0	copy fasta	PTPA	chr9	129106415	129153946
PTPA_chr9_129106415_129153946	0/0	t0007	1669	2	2	0	0	0	0	copy fasta	PTPA	chr9	129106415	129153946
PTPA_chr9_129106415_129153946	0/0	t0008	1669	2	2	0	0	0	0	copy fasta	PTPA	chr9	129106415	129153946
PTPA_chr9_129106415_129153946	1/0	t0009	1669	2	1	0	0	0	0	copy fasta	PTPA	chr9	129106415	129153946
PTPA_chr9_129106415_129153946	0/0	t0010	1669	2	2	0	0	0	0	copy fasta	PTPA	chr9	129106415	129153946
PTPA_chr9_129106415_129153946	0/0	t0011	1669	2	2	0	0	0	0	copy fasta	PTPA	chr9	129106415	129153946
PTPA_chr9_129106415_129153946	0/0	t0012	1669	1	0	0	1	0	0	copy fasta	PTPA	chr9	129106415	129153946
PTPA_chr9_129106415_129153946	0/0	t0013	1669	1	0	0	1	0	0	copy fasta	PTPA	chr9	129106415	129153946
PTPA_chr9_129106415_129153946	0/0	t0014	1669	1	0	1	0	0	0	copy fasta	PTPA	chr9	129106415	129153946
PTPA_chr9_129106415_129153946	0/0	t0015	1669	1	0	0	1	0	0	copy fasta	PTPA	chr9	129106415	129153946
PTPA_chr9_129106415_129153946	0/0	t0016	1669	1	1	0	0	0	0	copy fasta	PTPA	chr9	129106415	129153946
PTPA_chr9_129106415_129153946	0/0	t0017	1669	1	0	0	1	0	0	copy fasta	PTPA	chr9	129106415	129153946
PTPA_chr9_129106415_129153946	0/0	t0018	1669	1	0	0	1	0	0	copy fasta	PTPA	chr9	129106415	129153946
PTPA_chr9_129106415_129153946	0/0	t0019	1669	1	0	0	0	0	1	copy fasta	PTPA	chr9	129106415	129153946
PTPA_chr9_129106415_129153946	0/0	t0020	1669	1	1	0	0	0	0	copy fasta	PTPA	chr9	129106415	129153946
PTPA_chr9_129106415_129153946	0/0	t0021	1669	1	0	1	0	0	0	copy fasta	PTPA	chr9	129106415	129153946
PTPDC1_chr9_94079464_94114853	1/1	t0001	1977	378	57	65	198	14	42	copy fasta	PTPDC1	chr9	94079464	94114853
PTPDC1_chr9_94079464_94114853	0/0	t0002	1977	16	16	0	0	0	0	copy fasta	PTPDC1	chr9	94079464	94114853
PTPDC1_chr9_94079464_94114853	0/0	t0003	1977	7	7	0	0	0	0	copy fasta	PTPDC1	chr9	94079464	94114853
PTPDC1_chr9_94079464_94114853	0/0	t0004	1977	6	5	1	0	0	0	copy fasta	PTPDC1	chr9	94079464	94114853
PTPDC1_chr9_94079464_94114853	0/0	t0005	1977	1	1	0	0	0	0	copy fasta	PTPDC1	chr9	94079464	94114853
PTPDC1_chr9_94079464_94114853	0/0	t0006	1977	1	0	0	1	0	0	copy fasta	PTPDC1	chr9	94079464	94114853
PTPDC1_chr9_94079464_94114853	0/0	t0007	1977	1	0	1	0	0	0	copy fasta	PTPDC1	chr9	94079464	94114853
PTPDC1_chr9_94079464_94114853	0/0	t0008	1977	1	0	0	1	0	0	copy fasta	PTPDC1	chr9	94079464	94114853
PTPDC1_chr9_94079464_94114853	0/0	t0009	1977	1	1	0	0	0	0	copy fasta	PTPDC1	chr9	94079464	94114853
PTPDC1_chr9_94079464_94114853	0/0	t0010	1977	1	0	1	0	0	0	copy fasta	PTPDC1	chr9	94079464	94114853
PTPDC1_chr9_94079464_94114853	0/0	t0011	1977	1	1	0	0	0	0	copy fasta	PTPDC1	chr9	94079464	94114853
PTPMT1_chr11_47560599_47578461	0/1	t0001	1857	374	72	66	181	14	40	copy fasta	PTPMT1	chr11	47560599	47578461
PTPMT1_chr11_47560599_47578461	0/0	t0002	1852	8	7	1	0	0	0	copy fasta	PTPMT1	chr11	47560599	47578461
PTPMT1_chr11_47560599_47578461	1/0	t0003	1857	4	3	0	0	0	0	copy fasta	PTPMT1	chr11	47560599	47578461
PTPMT1_chr11_47560599_47578461	0/0	t0004	1857	2	2	0	0	0	0	copy fasta	PTPMT1	chr11	47560599	47578461
PTPMT1_chr11_47560599_47578461	0/0	t0005	1857	2	0	2	0	0	0	copy fasta	PTPMT1	chr11	47560599	47578461
PTPMT1_chr11_47560599_47578461	0/0	t0006	1857	2	0	2	0	0	0	copy fasta	PTPMT1	chr11	47560599	47578461
PTPMT1_chr11_47560599_47578461	0/0	t0007	1857	1	1	0	0	0	0	copy fasta	PTPMT1	chr11	47560599	47578461
PTPMT1_chr11_47560599_47578461	0/0	t0008	1857	1	1	0	0	0	0	copy fasta	PTPMT1	chr11	47560599	47578461
PTPMT1_chr11_47560599_47578461	0/0	t0009	1857	1	0	1	0	0	0	copy fasta	PTPMT1	chr11	47560599	47578461
PTPMT1_chr11_47560599_47578461	0/0	t0010	1857	1	0	0	1	0	0	copy fasta	PTPMT1	chr11	47560599	47578461
PTPN11_chr12_112413947_112514918	0/0	t0001	4289	125	52	12	52	1	8	copy fasta	PTPN11	chr12	112413947	112514918
PTPN11_chr12_112413947_112514918	0/0	t0002	4283	78	7	13	54	1	3	copy fasta	PTPN11	chr12	112413947	112514918
PTPN11_chr12_112413947_112514918	1/1	t0003	4292	61	6	18	18	3	14	copy fasta	PTPN11	chr12	112413947	112514918
PTPN11_chr12_112413947_112514918	0/0	t0004	4286	7	5	1	0	0	1	copy fasta	PTPN11	chr12	112413947	112514918
PTPN11_chr12_112413947_112514918	0/0	t0005	4286	6	6	0	0	0	0	copy fasta	PTPN11	chr12	112413947	112514918
PTPN11_chr12_112413947_112514918	0/0	t0006	4288	5	2	2	0	1	0	copy fasta	PTPN11	chr12	112413947	112514918
PTPN11_chr12_112413947_112514918	0/0	t0007	4289	3	3	0	0	0	0	copy fasta	PTPN11	chr12	112413947	112514918
PTPN11_chr12_112413947_112514918	0/0	t0008	4268	1	0	0	1	0	0	copy fasta	PTPN11	chr12	112413947	112514918
PTPN11_chr12_112413947_112514918	0/0	t0009	4286	1	1	0	0	0	0	copy fasta	PTPN11	chr12	112413947	112514918