JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PTPN11_chr12_112413947_112514918	0/0	t0010	4289	1	0	0	1	0	0	copy fasta	PTPN11	chr12	112413947	112514918
PTPN11_chr12_112413947_112514918	0/0	t0011	4292	1	0	0	1	0	0	copy fasta	PTPN11	chr12	112413947	112514918
PTPN11_chr12_112413947_112514918	0/0	t0012	4289	1	0	0	1	0	0	copy fasta	PTPN11	chr12	112413947	112514918
PTPN11_chr12_112413947_112514918	0/0	t0013	4292	1	0	0	1	0	0	copy fasta	PTPN11	chr12	112413947	112514918
PTPN11_chr12_112413947_112514918	0/0	t0014	4292	1	0	0	1	0	0	copy fasta	PTPN11	chr12	112413947	112514918
PTPN11_chr12_112413947_112514918	0/0	t0015	4292	1	0	0	1	0	0	copy fasta	PTPN11	chr12	112413947	112514918
PTPN11_chr12_112413947_112514918	0/0	t0016	4292	1	0	0	0	0	1	copy fasta	PTPN11	chr12	112413947	112514918
PTPN11_chr12_112413947_112514918	0/0	t0017	4289	1	0	0	1	0	0	copy fasta	PTPN11	chr12	112413947	112514918
PTPN11_chr12_112413947_112514918	0/0	t0018	4286	1	1	0	0	0	0	copy fasta	PTPN11	chr12	112413947	112514918
PTPN11_chr12_112413947_112514918	0/0	t0019	4283	1	0	0	1	0	0	copy fasta	PTPN11	chr12	112413947	112514918
PTPN11_chr12_112413947_112514918	0/0	t0020	4268	1	0	0	1	0	0	copy fasta	PTPN11	chr12	112413947	112514918
PTPN11_chr12_112413947_112514918	0/0	t0021	4289	1	1	0	0	0	0	copy fasta	PTPN11	chr12	112413947	112514918
PTPN11_chr12_112413947_112514918	0/0	t0022	4289	1	0	0	0	0	1	copy fasta	PTPN11	chr12	112413947	112514918
PTPN12_chr7_77532295_77645069	0/1	t0001	1043	304	83	59	110	16	35	copy fasta	PTPN12	chr7	77532295	77645069
PTPN12_chr7_77532295_77645069	0/0	t0002	1043	3	2	1	0	0	0	copy fasta	PTPN12	chr7	77532295	77645069
PTPN12_chr7_77532295_77645069	0/0	t0003	1043	1	1	0	0	0	0	copy fasta	PTPN12	chr7	77532295	77645069
PTPN12_chr7_77532295_77645069	0/0	t0004	1043	1	0	0	0	0	1	copy fasta	PTPN12	chr7	77532295	77645069
PTPN12_chr7_77532295_77645069	1/0	t0005	1042	1	0	0	0	0	0	copy fasta	PTPN12	chr7	77532295	77645069
PTPN13_chr4_86589315_86820161	1/1	t0001	1091	88	21	16	44	2	3	copy fasta	PTPN13	chr4	86589315	86820161
PTPN13_chr4_86589315_86820161	0/0	t0002	1091	74	8	18	39	7	2	copy fasta	PTPN13	chr4	86589315	86820161
PTPN13_chr4_86589315_86820161	0/0	t0003	1091	16	15	1	0	0	0	copy fasta	PTPN13	chr4	86589315	86820161
PTPN13_chr4_86589315_86820161	0/0	t0004	1091	9	3	4	1	0	1	copy fasta	PTPN13	chr4	86589315	86820161
PTPN13_chr4_86589315_86820161	0/0	t0005	1091	6	3	2	0	1	0	copy fasta	PTPN13	chr4	86589315	86820161
PTPN13_chr4_86589315_86820161	0/0	t0006	1091	1	1	0	0	0	0	copy fasta	PTPN13	chr4	86589315	86820161
PTPN13_chr4_86589315_86820161	0/0	t0007	1091	1	0	0	1	0	0	copy fasta	PTPN13	chr4	86589315	86820161
PTPN13_chr4_86589315_86820161	0/0	t0008	1091	1	0	0	1	0	0	copy fasta	PTPN13	chr4	86589315	86820161
PTPN13_chr4_86589315_86820161	0/0	t0009	1091	1	0	1	0	0	0	copy fasta	PTPN13	chr4	86589315	86820161
PTPN13_chr4_86589315_86820161	0/0	t0010	1091	1	1	0	0	0	0	copy fasta	PTPN13	chr4	86589315	86820161
PTPN14_chr1_214343700_214556602	0/0	t0001	9796	21	1	7	10	0	3	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0002	9798	14	2	0	10	1	1	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0003	9794	11	0	3	7	1	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0004	9802	5	0	0	4	0	1	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0005	9797	5	1	1	0	1	2	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0006	9797	5	0	0	5	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0007	9796	4	0	2	2	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0008	9799	3	3	0	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0009	9801	3	0	1	0	0	2	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0010	9794	3	3	0	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0011	9785	3	0	1	1	0	1	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0012	9797	3	1	1	0	0	1	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0013	9796	3	0	1	1	1	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0014	9798	2	2	0	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0015	9800	2	2	0	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0016	9799	2	0	0	1	0	1	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0017	9795	2	0	0	2	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0018	9795	2	0	0	2	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0019	9784	2	0	0	1	0	1	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0020	9797	2	0	0	2	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0021	9798	2	2	0	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	1/0	t0022	9797	2	0	0	1	0	0	copy fasta	PTPN14	chr1	214343700	214556602