JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PTPN14_chr1_214343700_214556602	0/0	t0023	9799	2	2	0	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0024	9785	2	1	0	0	0	1	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0025	9799	2	0	1	0	0	1	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0026	9798	2	0	1	0	0	1	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0027	9794	2	0	0	0	0	2	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0028	9794	2	2	0	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0029	9798	2	2	0	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0030	9793	1	0	0	1	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0031	9798	1	1	0	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0032	9798	1	1	0	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0033	9799	1	0	1	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0034	9798	1	1	0	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0035	9802	1	0	1	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0036	9799	1	0	0	1	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0037	9801	1	0	1	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0038	9801	1	0	1	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0039	9800	1	0	1	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0040	9802	1	0	0	1	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0041	9795	1	0	0	1	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0042	9799	1	0	0	1	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0043	9797	1	1	0	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0044	9798	1	0	0	1	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0045	9796	1	1	0	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0046	9798	1	0	0	1	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0047	9796	1	0	1	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0048	9796	1	0	0	1	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0049	9795	1	0	0	1	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0050	9794	1	0	0	1	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0051	9794	1	0	0	0	0	1	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0052	9794	1	0	0	1	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0053	9794	1	0	1	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0054	9794	1	0	0	1	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0055	9797	1	1	0	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0056	9785	1	0	0	1	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0057	9798	1	1	0	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0058	9796	1	1	0	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0059	9797	1	0	1	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0060	9785	1	0	0	1	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0061	9797	1	0	0	0	1	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0062	9800	1	0	0	1	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0063	9796	1	1	0	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0064	9801	1	1	0	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0065	9797	1	1	0	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0066	9819	1	0	0	0	0	1	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0067	9803	1	1	0	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0068	9800	1	0	0	0	0	1	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0069	9798	1	0	0	1	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0070	9798	1	1	0	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0071	9800	1	1	0	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0072	9799	1	0	0	1	0	0	copy fasta	PTPN14	chr1	214343700	214556602