JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PTPN14_chr1_214343700_214556602	0/0	t0073	9798	1	1	0	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0074	9797	1	0	1	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0075	9799	1	1	0	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0076	9797	1	1	0	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0077	9798	1	1	0	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0078	9796	1	0	1	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0079	9796	1	0	0	0	0	1	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0080	9795	1	0	0	0	1	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0081	9795	1	0	1	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0082	9796	1	0	1	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0083	9797	1	0	0	1	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0084	9797	1	1	0	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0085	9798	1	1	0	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0086	9799	1	1	0	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0087	9799	1	1	0	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0088	9799	1	1	0	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0089	9797	1	1	0	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0090	9798	1	1	0	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0091	9797	1	0	1	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0092	9801	1	0	1	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0093	9802	1	0	1	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0094	9798	1	0	0	1	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0095	9799	1	0	0	1	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/1	t0096	9797	1	0	0	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0097	9794	1	0	0	1	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0098	9794	1	0	0	1	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0099	9793	1	0	1	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0100	9795	1	0	0	1	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0101	9794	1	0	0	1	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0102	9797	1	1	0	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0103	9797	1	1	0	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0104	9796	1	0	0	0	1	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0105	9798	1	0	1	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0106	9797	1	0	0	1	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0107	9799	1	0	0	1	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0108	9799	1	0	0	1	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0109	9795	1	0	0	1	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0110	9796	1	1	0	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0111	9796	1	0	0	1	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0112	9797	1	0	0	1	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0113	9797	1	0	0	1	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0114	9795	1	0	0	1	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0115	9797	1	0	0	1	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0116	9796	1	0	0	1	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0117	9799	1	0	1	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0118	9794	1	0	0	1	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0119	9798	1	1	0	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0120	9798	1	1	0	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0121	9797	1	1	0	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0122	9802	1	0	1	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602