JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PTPN14_chr1_214343700_214556602	0/0	t0173	9797	1	1	0	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0174	9799	1	1	0	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0175	9798	1	1	0	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0176	9799	1	1	0	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0177	9799	1	1	0	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0178	9797	1	1	0	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0179	9797	1	1	0	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0180	9780	1	1	0	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0181	9806	1	1	0	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0182	9799	1	1	0	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0183	9798	1	1	0	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0184	9795	1	1	0	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0185	9798	1	1	0	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	t0186	9798	1	1	0	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN18_chr2_130351056_130380405	1/1	t0001	2234	196	20	37	102	10	25	copy fasta	PTPN18	chr2	130351056	130380405
PTPN18_chr2_130351056_130380405	0/0	t0002	2238	54	14	8	23	4	5	copy fasta	PTPN18	chr2	130351056	130380405
PTPN18_chr2_130351056_130380405	0/0	t0003	2238	30	0	0	28	0	2	copy fasta	PTPN18	chr2	130351056	130380405
PTPN18_chr2_130351056_130380405	0/0	t0004	2238	23	20	3	0	0	0	copy fasta	PTPN18	chr2	130351056	130380405
PTPN18_chr2_130351056_130380405	0/0	t0005	2238	9	0	4	4	1	0	copy fasta	PTPN18	chr2	130351056	130380405
PTPN18_chr2_130351056_130380405	0/0	t0006	2234	9	8	0	0	0	1	copy fasta	PTPN18	chr2	130351056	130380405
PTPN18_chr2_130351056_130380405	0/0	t0007	2233	8	1	3	2	0	2	copy fasta	PTPN18	chr2	130351056	130380405
PTPN18_chr2_130351056_130380405	0/0	t0008	2239	7	7	0	0	0	0	copy fasta	PTPN18	chr2	130351056	130380405
PTPN18_chr2_130351056_130380405	0/0	t0009	2238	6	6	0	0	0	0	copy fasta	PTPN18	chr2	130351056	130380405
PTPN18_chr2_130351056_130380405	0/0	t0010	2237	4	1	1	2	0	0	copy fasta	PTPN18	chr2	130351056	130380405
PTPN18_chr2_130351056_130380405	0/0	t0011	2238	4	4	0	0	0	0	copy fasta	PTPN18	chr2	130351056	130380405
PTPN18_chr2_130351056_130380405	0/0	t0012	2238	3	0	2	0	0	1	copy fasta	PTPN18	chr2	130351056	130380405
PTPN18_chr2_130351056_130380405	0/0	t0013	2237	3	3	0	0	0	0	copy fasta	PTPN18	chr2	130351056	130380405
PTPN18_chr2_130351056_130380405	0/0	t0014	2234	2	2	0	0	0	0	copy fasta	PTPN18	chr2	130351056	130380405
PTPN18_chr2_130351056_130380405	0/0	t0015	2237	2	0	2	0	0	0	copy fasta	PTPN18	chr2	130351056	130380405
PTPN18_chr2_130351056_130380405	0/0	t0016	2230	2	2	0	0	0	0	copy fasta	PTPN18	chr2	130351056	130380405
PTPN18_chr2_130351056_130380405	0/0	t0017	2238	2	2	0	0	0	0	copy fasta	PTPN18	chr2	130351056	130380405
PTPN18_chr2_130351056_130380405	0/0	t0018	2238	1	1	0	0	0	0	copy fasta	PTPN18	chr2	130351056	130380405
PTPN18_chr2_130351056_130380405	0/0	t0019	2237	1	0	0	1	0	0	copy fasta	PTPN18	chr2	130351056	130380405
PTPN18_chr2_130351056_130380405	0/0	t0020	2234	1	0	0	0	1	0	copy fasta	PTPN18	chr2	130351056	130380405
PTPN18_chr2_130351056_130380405	0/0	t0021	2234	1	1	0	0	0	0	copy fasta	PTPN18	chr2	130351056	130380405
PTPN18_chr2_130351056_130380405	0/0	t0022	2237	1	0	0	1	0	0	copy fasta	PTPN18	chr2	130351056	130380405
PTPN18_chr2_130351056_130380405	0/0	t0023	2238	1	1	0	0	0	0	copy fasta	PTPN18	chr2	130351056	130380405
PTPN18_chr2_130351056_130380405	0/0	t0024	2234	1	1	0	0	0	0	copy fasta	PTPN18	chr2	130351056	130380405
PTPN18_chr2_130351056_130380405	0/0	t0025	2233	1	1	0	0	0	0	copy fasta	PTPN18	chr2	130351056	130380405
PTPN18_chr2_130351056_130380405	0/0	t0026	2234	1	0	0	0	0	1	copy fasta	PTPN18	chr2	130351056	130380405
PTPN18_chr2_130351056_130380405	0/0	t0027	2234	1	0	0	1	0	0	copy fasta	PTPN18	chr2	130351056	130380405
PTPN18_chr2_130351056_130380405	0/0	t0028	2234	1	1	0	0	0	0	copy fasta	PTPN18	chr2	130351056	130380405
PTPN18_chr2_130351056_130380405	0/0	t0029	2234	1	0	0	0	0	1	copy fasta	PTPN18	chr2	130351056	130380405
PTPN18_chr2_130351056_130380405	0/0	t0030	2239	1	1	0	0	0	0	copy fasta	PTPN18	chr2	130351056	130380405
PTPN18_chr2_130351056_130380405	0/0	t0031	2238	1	1	0	0	0	0	copy fasta	PTPN18	chr2	130351056	130380405
PTPN18_chr2_130351056_130380405	0/0	t0032	2238	1	1	0	0	0	0	copy fasta	PTPN18	chr2	130351056	130380405
PTPN18_chr2_130351056_130380405	0/0	t0033	2230	1	1	0	0	0	0	copy fasta	PTPN18	chr2	130351056	130380405
PTPN1_chr20_50505383_50590241	1/1	t0001	2672	297	66	69	122	10	28	copy fasta	PTPN1	chr20	50505383	50590241
PTPN1_chr20_50505383_50590241	0/0	t0002	2673	9	1	5	0	0	3	copy fasta	PTPN1	chr20	50505383	50590241
PTPN1_chr20_50505383_50590241	0/0	t0003	2672	4	4	0	0	0	0	copy fasta	PTPN1	chr20	50505383	50590241