JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PTPN1_chr20_50505383_50590241	0/0	t0004	2672	4	3	1	0	0	0	copy fasta	PTPN1	chr20	50505383	50590241
PTPN1_chr20_50505383_50590241	0/0	t0005	2672	3	0	2	0	0	1	copy fasta	PTPN1	chr20	50505383	50590241
PTPN1_chr20_50505383_50590241	0/0	t0006	2672	3	3	0	0	0	0	copy fasta	PTPN1	chr20	50505383	50590241
PTPN1_chr20_50505383_50590241	0/0	t0007	2672	2	0	0	2	0	0	copy fasta	PTPN1	chr20	50505383	50590241
PTPN1_chr20_50505383_50590241	0/0	t0008	2672	2	2	0	0	0	0	copy fasta	PTPN1	chr20	50505383	50590241
PTPN1_chr20_50505383_50590241	0/0	t0009	2672	1	1	0	0	0	0	copy fasta	PTPN1	chr20	50505383	50590241
PTPN1_chr20_50505383_50590241	0/0	t0010	2672	1	1	0	0	0	0	copy fasta	PTPN1	chr20	50505383	50590241
PTPN1_chr20_50505383_50590241	0/0	t0011	2672	1	1	0	0	0	0	copy fasta	PTPN1	chr20	50505383	50590241
PTPN1_chr20_50505383_50590241	0/0	t0012	2672	1	0	1	0	0	0	copy fasta	PTPN1	chr20	50505383	50590241
PTPN1_chr20_50505383_50590241	0/0	t0013	2672	1	0	0	1	0	0	copy fasta	PTPN1	chr20	50505383	50590241
PTPN1_chr20_50505383_50590241	0/0	t0014	2672	1	1	0	0	0	0	copy fasta	PTPN1	chr20	50505383	50590241
PTPN1_chr20_50505383_50590241	0/0	t0015	2672	1	1	0	0	0	0	copy fasta	PTPN1	chr20	50505383	50590241
PTPN1_chr20_50505383_50590241	0/0	t0016	2672	1	0	0	1	0	0	copy fasta	PTPN1	chr20	50505383	50590241
PTPN1_chr20_50505383_50590241	0/0	t0017	2672	1	1	0	0	0	0	copy fasta	PTPN1	chr20	50505383	50590241
PTPN1_chr20_50505383_50590241	0/0	t0018	2672	1	1	0	0	0	0	copy fasta	PTPN1	chr20	50505383	50590241
PTPN1_chr20_50505383_50590241	0/0	t0019	2672	1	0	0	1	0	0	copy fasta	PTPN1	chr20	50505383	50590241
PTPN1_chr20_50505383_50590241	0/0	t0020	2672	1	0	0	1	0	0	copy fasta	PTPN1	chr20	50505383	50590241
PTPN20_chr10_46906428_47007322	1/0	t0001	1779	147	17	34	62	12	21	copy fasta	PTPN20	chr10	46906428	47007322
PTPN20_chr10_46906428_47007322	0/1	t0002	1779	100	14	15	54	4	12	copy fasta	PTPN20	chr10	46906428	47007322
PTPN20_chr10_46906428_47007322	0/0	t0003	1779	42	20	3	12	2	5	copy fasta	PTPN20	chr10	46906428	47007322
PTPN20_chr10_46906428_47007322	0/0	t0004	1779	7	6	1	0	0	0	copy fasta	PTPN20	chr10	46906428	47007322
PTPN20_chr10_46906428_47007322	0/0	t0005	1779	7	2	4	1	0	0	copy fasta	PTPN20	chr10	46906428	47007322
PTPN20_chr10_46906428_47007322	0/0	t0006	1779	4	4	0	0	0	0	copy fasta	PTPN20	chr10	46906428	47007322
PTPN20_chr10_46906428_47007322	0/0	t0007	1779	2	0	0	2	0	0	copy fasta	PTPN20	chr10	46906428	47007322
PTPN20_chr10_46906428_47007322	0/0	t0008	1779	1	0	0	1	0	0	copy fasta	PTPN20	chr10	46906428	47007322
PTPN20_chr10_46906428_47007322	0/0	t0009	1779	1	0	1	0	0	0	copy fasta	PTPN20	chr10	46906428	47007322
PTPN20_chr10_46906428_47007322	0/0	t0010	2024	1	1	0	0	0	0	copy fasta	PTPN20	chr10	46906428	47007322
PTPN21_chr14_88460778_88560007	0/0	t0001	2916	81	11	17	47	3	3	copy fasta	PTPN21	chr14	88460778	88560007
PTPN21_chr14_88460778_88560007	0/0	t0002	2899	66	5	14	36	5	6	copy fasta	PTPN21	chr14	88460778	88560007
PTPN21_chr14_88460778_88560007	0/0	t0003	2916	41	0	5	35	0	1	copy fasta	PTPN21	chr14	88460778	88560007
PTPN21_chr14_88460778_88560007	1/0	t0004	2919	27	13	0	9	0	4	copy fasta	PTPN21	chr14	88460778	88560007
PTPN21_chr14_88460778_88560007	0/1	t0005	2916	25	1	10	2	6	5	copy fasta	PTPN21	chr14	88460778	88560007
PTPN21_chr14_88460778_88560007	0/0	t0006	2917	19	12	0	3	1	3	copy fasta	PTPN21	chr14	88460778	88560007
PTPN21_chr14_88460778_88560007	0/0	t0007	2922	12	11	1	0	0	0	copy fasta	PTPN21	chr14	88460778	88560007
PTPN21_chr14_88460778_88560007	0/0	t0008	2916	10	8	2	0	0	0	copy fasta	PTPN21	chr14	88460778	88560007
PTPN21_chr14_88460778_88560007	0/0	t0009	2917	7	3	2	0	0	2	copy fasta	PTPN21	chr14	88460778	88560007
PTPN21_chr14_88460778_88560007	0/0	t0010	2899	5	0	0	5	0	0	copy fasta	PTPN21	chr14	88460778	88560007
PTPN21_chr14_88460778_88560007	0/0	t0011	2917	4	1	0	3	0	0	copy fasta	PTPN21	chr14	88460778	88560007
PTPN21_chr14_88460778_88560007	0/0	t0012	2917	4	0	3	0	0	1	copy fasta	PTPN21	chr14	88460778	88560007
PTPN21_chr14_88460778_88560007	0/0	t0013	2922	3	3	0	0	0	0	copy fasta	PTPN21	chr14	88460778	88560007
PTPN21_chr14_88460778_88560007	0/0	t0014	2900	3	0	1	2	0	0	copy fasta	PTPN21	chr14	88460778	88560007
PTPN21_chr14_88460778_88560007	0/0	t0015	2902	3	0	0	3	0	0	copy fasta	PTPN21	chr14	88460778	88560007
PTPN21_chr14_88460778_88560007	0/0	t0016	2899	3	3	0	0	0	0	copy fasta	PTPN21	chr14	88460778	88560007
PTPN21_chr14_88460778_88560007	0/0	t0017	2920	2	0	0	1	0	1	copy fasta	PTPN21	chr14	88460778	88560007
PTPN21_chr14_88460778_88560007	0/0	t0018	2925	2	2	0	0	0	0	copy fasta	PTPN21	chr14	88460778	88560007
PTPN21_chr14_88460778_88560007	0/0	t0019	2917	2	0	0	0	0	2	copy fasta	PTPN21	chr14	88460778	88560007
PTPN21_chr14_88460778_88560007	0/0	t0020	2916	2	0	0	2	0	0	copy fasta	PTPN21	chr14	88460778	88560007
PTPN21_chr14_88460778_88560007	0/0	t0021	2916	2	0	0	0	0	2	copy fasta	PTPN21	chr14	88460778	88560007
PTPN21_chr14_88460778_88560007	0/0	t0022	2899	2	2	0	0	0	0	copy fasta	PTPN21	chr14	88460778	88560007
PTPN21_chr14_88460778_88560007	0/0	t0023	2916	1	1	0	0	0	0	copy fasta	PTPN21	chr14	88460778	88560007