Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ATP9A_chr20_51591514_51773390	0/0	t0058	4721	1	0	1	0	0	0	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	t0059	4718	1	0	0	1	0	0	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	t0060	4718	1	1	0	0	0	0	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	t0061	4717	1	0	1	0	0	0	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	t0062	4716	1	0	0	1	0	0	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	t0063	4712	1	1	0	0	0	0	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	t0064	4714	1	1	0	0	0	0	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	t0065	4714	1	1	0	0	0	0	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	t0066	4720	1	1	0	0	0	0	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	t0067	4723	1	0	1	0	0	0	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	t0068	4721	1	0	1	0	0	0	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	t0069	4722	1	0	0	1	0	0	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	t0070	4719	1	0	0	1	0	0	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	t0071	4719	1	0	1	0	0	0	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	t0072	4719	1	0	0	0	0	1	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	t0073	4719	1	0	0	1	0	0	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	t0074	4720	1	0	1	0	0	0	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	t0075	4721	1	0	1	0	0	0	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	t0076	4720	1	0	0	1	0	0	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	t0077	4717	1	1	0	0	0	0	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	t0078	4718	1	0	0	1	0	0	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	t0079	4717	1	0	0	0	1	0	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	t0080	4718	1	1	0	0	0	0	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	t0081	4715	1	0	0	1	0	0	copy fasta	ATP9A	chr20	51591514	51773390
ATP9B_chr18_79064394_79383283	1/0	t0001	918	118	28	25	46	9	9	copy fasta	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	t0002	918	79	3	10	50	4	12	copy fasta	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/1	t0003	918	49	12	8	22	1	5	copy fasta	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	t0004	918	28	25	3	0	0	0	copy fasta	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	t0005	918	6	5	1	0	0	0	copy fasta	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	t0006	919	5	5	0	0	0	0	copy fasta	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	t0007	918	3	2	1	0	0	0	copy fasta	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	t0008	918	2	0	0	2	0	0	copy fasta	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	t0009	918	2	2	0	0	0	0	copy fasta	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	t0010	918	2	0	2	0	0	0	copy fasta	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	t0011	919	1	0	0	1	0	0	copy fasta	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	t0012	918	1	0	0	1	0	0	copy fasta	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	t0013	918	1	0	0	1	0	0	copy fasta	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	t0014	853	1	0	0	1	0	0	copy fasta	ATP9B	chr18	79064394	79383283
ATPAF1_chr1_46627737_46673364	1/0	t0001	3082	111	34	4	63	0	9	copy fasta	ATPAF1	chr1	46627737	46673364
ATPAF1_chr1_46627737_46673364	0/0	t0002	3082	108	10	22	64	1	11	copy fasta	ATPAF1	chr1	46627737	46673364
ATPAF1_chr1_46627737_46673364	0/0	t0003	3083	75	12	21	31	4	7	copy fasta	ATPAF1	chr1	46627737	46673364
ATPAF1_chr1_46627737_46673364	0/1	t0004	3083	52	18	7	9	3	14	copy fasta	ATPAF1	chr1	46627737	46673364
ATPAF1_chr1_46627737_46673364	0/0	t0005	3082	15	0	2	11	0	2	copy fasta	ATPAF1	chr1	46627737	46673364
ATPAF1_chr1_46627737_46673364	0/0	t0006	3082	6	0	0	6	0	0	copy fasta	ATPAF1	chr1	46627737	46673364
ATPAF1_chr1_46627737_46673364	0/0	t0007	3083	6	0	0	6	0	0	copy fasta	ATPAF1	chr1	46627737	46673364
ATPAF1_chr1_46627737_46673364	0/0	t0008	3085	4	4	0	0	0	0	copy fasta	ATPAF1	chr1	46627737	46673364
ATPAF1_chr1_46627737_46673364	0/0	t0009	3082	4	4	0	0	0	0	copy fasta	ATPAF1	chr1	46627737	46673364
ATPAF1_chr1_46627737_46673364	0/0	t0010	3082	3	3	0	0	0	0	copy fasta	ATPAF1	chr1	46627737	46673364
ATPAF1_chr1_46627737_46673364	0/0	t0011	3082	3	0	0	3	0	0	copy fasta	ATPAF1	chr1	46627737	46673364
ATPAF1_chr1_46627737_46673364	0/0	t0012	3083	3	0	0	0	2	1	copy fasta	ATPAF1	chr1	46627737	46673364