JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PTPN21_chr14_88460778_88560007	0/0	t0024	2918	1	0	0	0	0	1	copy fasta	PTPN21	chr14	88460778	88560007
PTPN21_chr14_88460778_88560007	0/0	t0025	2918	1	0	0	0	0	1	copy fasta	PTPN21	chr14	88460778	88560007
PTPN21_chr14_88460778_88560007	0/0	t0026	2922	1	1	0	0	0	0	copy fasta	PTPN21	chr14	88460778	88560007
PTPN21_chr14_88460778_88560007	0/0	t0027	2922	1	1	0	0	0	0	copy fasta	PTPN21	chr14	88460778	88560007
PTPN21_chr14_88460778_88560007	0/0	t0028	2916	1	0	0	1	0	0	copy fasta	PTPN21	chr14	88460778	88560007
PTPN21_chr14_88460778_88560007	0/0	t0029	2916	1	1	0	0	0	0	copy fasta	PTPN21	chr14	88460778	88560007
PTPN21_chr14_88460778_88560007	0/0	t0030	2916	1	1	0	0	0	0	copy fasta	PTPN21	chr14	88460778	88560007
PTPN21_chr14_88460778_88560007	0/0	t0031	2916	1	0	1	0	0	0	copy fasta	PTPN21	chr14	88460778	88560007
PTPN21_chr14_88460778_88560007	0/0	t0032	2916	1	0	1	0	0	0	copy fasta	PTPN21	chr14	88460778	88560007
PTPN21_chr14_88460778_88560007	0/0	t0033	2916	1	0	1	0	0	0	copy fasta	PTPN21	chr14	88460778	88560007
PTPN21_chr14_88460778_88560007	0/0	t0034	2916	1	0	0	0	0	1	copy fasta	PTPN21	chr14	88460778	88560007
PTPN21_chr14_88460778_88560007	0/0	t0035	2919	1	0	0	1	0	0	copy fasta	PTPN21	chr14	88460778	88560007
PTPN21_chr14_88460778_88560007	0/0	t0036	2916	1	0	0	1	0	0	copy fasta	PTPN21	chr14	88460778	88560007
PTPN21_chr14_88460778_88560007	0/0	t0037	2916	1	1	0	0	0	0	copy fasta	PTPN21	chr14	88460778	88560007
PTPN21_chr14_88460778_88560007	0/0	t0038	2916	1	1	0	0	0	0	copy fasta	PTPN21	chr14	88460778	88560007
PTPN21_chr14_88460778_88560007	0/0	t0039	2916	1	0	0	1	0	0	copy fasta	PTPN21	chr14	88460778	88560007
PTPN21_chr14_88460778_88560007	0/0	t0040	2916	1	0	0	0	1	0	copy fasta	PTPN21	chr14	88460778	88560007
PTPN21_chr14_88460778_88560007	0/0	t0041	2916	1	0	1	0	0	0	copy fasta	PTPN21	chr14	88460778	88560007
PTPN21_chr14_88460778_88560007	0/0	t0042	2901	1	1	0	0	0	0	copy fasta	PTPN21	chr14	88460778	88560007
PTPN21_chr14_88460778_88560007	0/0	t0043	2899	1	1	0	0	0	0	copy fasta	PTPN21	chr14	88460778	88560007
PTPN21_chr14_88460778_88560007	0/0	t0044	2899	1	0	1	0	0	0	copy fasta	PTPN21	chr14	88460778	88560007
PTPN21_chr14_88460778_88560007	0/0	t0045	2900	1	0	0	0	0	1	copy fasta	PTPN21	chr14	88460778	88560007
PTPN22_chr1_113808811_113876712	0/1	t0001	1184	177	66	29	45	8	28	copy fasta	PTPN22	chr1	113808811	113876712
PTPN22_chr1_113808811_113876712	1/0	t0002	1184	108	8	24	62	5	8	copy fasta	PTPN22	chr1	113808811	113876712
PTPN22_chr1_113808811_113876712	0/0	t0003	1184	67	2	12	46	1	6	copy fasta	PTPN22	chr1	113808811	113876712
PTPN22_chr1_113808811_113876712	0/0	t0004	1185	3	0	0	3	0	0	copy fasta	PTPN22	chr1	113808811	113876712
PTPN22_chr1_113808811_113876712	0/0	t0005	1181	3	2	1	0	0	0	copy fasta	PTPN22	chr1	113808811	113876712
PTPN23_chr3_47376021_47418435	1/1	t0001	327	330	81	62	143	8	34	copy fasta	PTPN23	chr3	47376021	47418435
PTPN23_chr3_47376021_47418435	0/0	t0002	327	1	1	0	0	0	0	copy fasta	PTPN23	chr3	47376021	47418435
PTPN23_chr3_47376021_47418435	0/0	t0003	327	1	0	0	1	0	0	copy fasta	PTPN23	chr3	47376021	47418435
PTPN2_chr18_12787152_12889237	1/0	t0001	2223	133	32	27	53	3	17	copy fasta	PTPN2	chr18	12787152	12889237
PTPN2_chr18_12787152_12889237	0/0	t0002	2223	60	12	6	37	1	4	copy fasta	PTPN2	chr18	12787152	12889237
PTPN2_chr18_12787152_12889237	0/0	t0003	2222	55	4	14	20	6	11	copy fasta	PTPN2	chr18	12787152	12889237
PTPN2_chr18_12787152_12889237	0/0	t0004	2225	32	1	1	20	3	7	copy fasta	PTPN2	chr18	12787152	12889237
PTPN2_chr18_12787152_12889237	0/1	t0005	2222	21	3	10	0	3	4	copy fasta	PTPN2	chr18	12787152	12889237
PTPN2_chr18_12787152_12889237	0/0	t0006	2222	13	0	8	5	0	0	copy fasta	PTPN2	chr18	12787152	12889237
PTPN2_chr18_12787152_12889237	0/0	t0007	2223	8	8	0	0	0	0	copy fasta	PTPN2	chr18	12787152	12889237
PTPN2_chr18_12787152_12889237	0/0	t0008	2221	6	6	0	0	0	0	copy fasta	PTPN2	chr18	12787152	12889237
PTPN2_chr18_12787152_12889237	0/0	t0009	2221	6	6	0	0	0	0	copy fasta	PTPN2	chr18	12787152	12889237
PTPN2_chr18_12787152_12889237	0/0	t0010	2222	6	3	0	2	0	1	copy fasta	PTPN2	chr18	12787152	12889237
PTPN2_chr18_12787152_12889237	0/0	t0011	2226	4	2	0	2	0	0	copy fasta	PTPN2	chr18	12787152	12889237
PTPN2_chr18_12787152_12889237	0/0	t0012	2222	3	3	0	0	0	0	copy fasta	PTPN2	chr18	12787152	12889237
PTPN2_chr18_12787152_12889237	0/0	t0013	2223	3	3	0	0	0	0	copy fasta	PTPN2	chr18	12787152	12889237
PTPN2_chr18_12787152_12889237	0/0	t0014	2223	3	3	0	0	0	0	copy fasta	PTPN2	chr18	12787152	12889237
PTPN2_chr18_12787152_12889237	0/0	t0015	2223	2	2	0	0	0	0	copy fasta	PTPN2	chr18	12787152	12889237
PTPN2_chr18_12787152_12889237	0/0	t0016	2222	2	0	0	2	0	0	copy fasta	PTPN2	chr18	12787152	12889237
PTPN2_chr18_12787152_12889237	0/0	t0017	2219	1	1	0	0	0	0	copy fasta	PTPN2	chr18	12787152	12889237
PTPN2_chr18_12787152_12889237	0/0	t0018	2222	1	0	1	0	0	0	copy fasta	PTPN2	chr18	12787152	12889237
PTPN2_chr18_12787152_12889237	0/0	t0019	2222	1	1	0	0	0	0	copy fasta	PTPN2	chr18	12787152	12889237
PTPN2_chr18_12787152_12889237	0/0	t0020	2223	1	0	1	0	0	0	copy fasta	PTPN2	chr18	12787152	12889237