JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PTPN2_chr18_12787152_12889237	0/0	t0021	2225	1	1	0	0	0	0	copy fasta	PTPN2	chr18	12787152	12889237
PTPN2_chr18_12787152_12889237	0/0	t0022	2223	1	0	0	1	0	0	copy fasta	PTPN2	chr18	12787152	12889237
PTPN2_chr18_12787152_12889237	0/0	t0023	2223	1	0	1	0	0	0	copy fasta	PTPN2	chr18	12787152	12889237
PTPN2_chr18_12787152_12889237	0/0	t0024	2223	1	0	1	0	0	0	copy fasta	PTPN2	chr18	12787152	12889237
PTPN2_chr18_12787152_12889237	0/0	t0025	2222	1	0	0	1	0	0	copy fasta	PTPN2	chr18	12787152	12889237
PTPN2_chr18_12787152_12889237	0/0	t0026	2223	1	1	0	0	0	0	copy fasta	PTPN2	chr18	12787152	12889237
PTPN2_chr18_12787152_12889237	0/0	t0027	2222	1	1	0	0	0	0	copy fasta	PTPN2	chr18	12787152	12889237
PTPN2_chr18_12787152_12889237	0/0	t0028	2219	1	1	0	0	0	0	copy fasta	PTPN2	chr18	12787152	12889237
PTPN2_chr18_12787152_12889237	0/0	t0029	2223	1	0	0	1	0	0	copy fasta	PTPN2	chr18	12787152	12889237
PTPN3_chr9_109370700_109503307	0/0	t0001	3943	27	4	5	18	0	0	copy fasta	PTPN3	chr9	109370700	109503307
PTPN3_chr9_109370700_109503307	0/0	t0002	3957	22	5	4	9	2	2	copy fasta	PTPN3	chr9	109370700	109503307
PTPN3_chr9_109370700_109503307	0/0	t0003	3961	21	4	5	9	3	0	copy fasta	PTPN3	chr9	109370700	109503307
PTPN3_chr9_109370700_109503307	1/0	t0004	3963	20	11	2	3	1	2	copy fasta	PTPN3	chr9	109370700	109503307
PTPN3_chr9_109370700_109503307	0/0	t0005	3955	18	0	6	8	1	3	copy fasta	PTPN3	chr9	109370700	109503307
PTPN3_chr9_109370700_109503307	0/1	t0006	3965	16	8	1	2	0	4	copy fasta	PTPN3	chr9	109370700	109503307
PTPN3_chr9_109370700_109503307	0/0	t0007	3953	15	3	4	8	0	0	copy fasta	PTPN3	chr9	109370700	109503307
PTPN3_chr9_109370700_109503307	0/0	t0008	3945	14	0	3	11	0	0	copy fasta	PTPN3	chr9	109370700	109503307
PTPN3_chr9_109370700_109503307	0/0	t0009	3959	12	0	1	9	0	2	copy fasta	PTPN3	chr9	109370700	109503307
PTPN3_chr9_109370700_109503307	0/0	t0010	3967	12	3	5	2	0	2	copy fasta	PTPN3	chr9	109370700	109503307
PTPN3_chr9_109370700_109503307	0/0	t0011	3945	10	0	3	6	1	0	copy fasta	PTPN3	chr9	109370700	109503307
PTPN3_chr9_109370700_109503307	0/0	t0012	3969	10	4	0	3	0	3	copy fasta	PTPN3	chr9	109370700	109503307
PTPN3_chr9_109370700_109503307	0/0	t0013	3949	8	0	3	5	0	0	copy fasta	PTPN3	chr9	109370700	109503307
PTPN3_chr9_109370700_109503307	0/0	t0014	3951	7	0	4	1	2	0	copy fasta	PTPN3	chr9	109370700	109503307
PTPN3_chr9_109370700_109503307	0/0	t0015	3939	6	6	0	0	0	0	copy fasta	PTPN3	chr9	109370700	109503307
PTPN3_chr9_109370700_109503307	0/0	t0016	3947	6	0	0	6	0	0	copy fasta	PTPN3	chr9	109370700	109503307
PTPN3_chr9_109370700_109503307	0/0	t0017	3939	5	4	1	0	0	0	copy fasta	PTPN3	chr9	109370700	109503307
PTPN3_chr9_109370700_109503307	0/0	t0018	3971	5	2	2	0	0	1	copy fasta	PTPN3	chr9	109370700	109503307
PTPN3_chr9_109370700_109503307	0/0	t0019	3947	4	1	1	1	1	0	copy fasta	PTPN3	chr9	109370700	109503307
PTPN3_chr9_109370700_109503307	0/0	t0020	3963	4	2	2	0	0	0	copy fasta	PTPN3	chr9	109370700	109503307
PTPN3_chr9_109370700_109503307	0/0	t0021	3973	4	1	0	2	0	1	copy fasta	PTPN3	chr9	109370700	109503307
PTPN3_chr9_109370700_109503307	0/0	t0022	3941	3	0	1	2	0	0	copy fasta	PTPN3	chr9	109370700	109503307
PTPN3_chr9_109370700_109503307	0/0	t0023	3961	3	3	0	0	0	0	copy fasta	PTPN3	chr9	109370700	109503307
PTPN3_chr9_109370700_109503307	0/0	t0024	3941	2	2	0	0	0	0	copy fasta	PTPN3	chr9	109370700	109503307
PTPN3_chr9_109370700_109503307	0/0	t0025	3959	2	0	2	0	0	0	copy fasta	PTPN3	chr9	109370700	109503307
PTPN3_chr9_109370700_109503307	0/0	t0026	3959	2	2	0	0	0	0	copy fasta	PTPN3	chr9	109370700	109503307
PTPN3_chr9_109370700_109503307	0/0	t0027	3961	2	0	2	0	0	0	copy fasta	PTPN3	chr9	109370700	109503307
PTPN3_chr9_109370700_109503307	0/0	t0028	3943	2	2	0	0	0	0	copy fasta	PTPN3	chr9	109370700	109503307
PTPN3_chr9_109370700_109503307	0/0	t0029	3945	2	0	0	2	0	0	copy fasta	PTPN3	chr9	109370700	109503307
PTPN3_chr9_109370700_109503307	0/0	t0030	3941	2	1	1	0	0	0	copy fasta	PTPN3	chr9	109370700	109503307
PTPN3_chr9_109370700_109503307	0/0	t0031	3951	1	1	0	0	0	0	copy fasta	PTPN3	chr9	109370700	109503307
PTPN3_chr9_109370700_109503307	0/0	t0032	3953	1	1	0	0	0	0	copy fasta	PTPN3	chr9	109370700	109503307
PTPN3_chr9_109370700_109503307	0/0	t0033	3965	1	0	0	1	0	0	copy fasta	PTPN3	chr9	109370700	109503307
PTPN3_chr9_109370700_109503307	0/0	t0034	3965	1	1	0	0	0	0	copy fasta	PTPN3	chr9	109370700	109503307
PTPN3_chr9_109370700_109503307	0/0	t0035	3967	1	0	0	1	0	0	copy fasta	PTPN3	chr9	109370700	109503307
PTPN3_chr9_109370700_109503307	0/0	t0036	3971	1	0	0	1	0	0	copy fasta	PTPN3	chr9	109370700	109503307
PTPN3_chr9_109370700_109503307	0/0	t0037	3943	1	0	0	1	0	0	copy fasta	PTPN3	chr9	109370700	109503307
PTPN3_chr9_109370700_109503307	0/0	t0038	3953	1	1	0	0	0	0	copy fasta	PTPN3	chr9	109370700	109503307
PTPN3_chr9_109370700_109503307	0/0	t0039	3953	1	1	0	0	0	0	copy fasta	PTPN3	chr9	109370700	109503307
PTPN3_chr9_109370700_109503307	0/0	t0040	3955	1	0	1	0	0	0	copy fasta	PTPN3	chr9	109370700	109503307
PTPN3_chr9_109370700_109503307	0/0	t0041	3965	1	0	1	0	0	0	copy fasta	PTPN3	chr9	109370700	109503307