JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PTPN3_chr9_109370700_109503307	0/0	t0042	3965	1	1	0	0	0	0	copy fasta	PTPN3	chr9	109370700	109503307
PTPN3_chr9_109370700_109503307	0/0	t0043	3967	1	1	0	0	0	0	copy fasta	PTPN3	chr9	109370700	109503307
PTPN3_chr9_109370700_109503307	0/0	t0044	3967	1	1	0	0	0	0	copy fasta	PTPN3	chr9	109370700	109503307
PTPN3_chr9_109370700_109503307	0/0	t0045	3973	1	0	0	1	0	0	copy fasta	PTPN3	chr9	109370700	109503307
PTPN3_chr9_109370700_109503307	0/0	t0046	3977	1	0	0	0	0	1	copy fasta	PTPN3	chr9	109370700	109503307
PTPN3_chr9_109370700_109503307	0/0	t0047	3979	1	0	0	1	0	0	copy fasta	PTPN3	chr9	109370700	109503307
PTPN3_chr9_109370700_109503307	0/0	t0048	3961	1	0	0	0	1	0	copy fasta	PTPN3	chr9	109370700	109503307
PTPN3_chr9_109370700_109503307	0/0	t0049	3969	1	0	0	0	0	1	copy fasta	PTPN3	chr9	109370700	109503307
PTPN3_chr9_109370700_109503307	0/0	t0050	3949	1	0	0	1	0	0	copy fasta	PTPN3	chr9	109370700	109503307
PTPN3_chr9_109370700_109503307	0/0	t0051	3947	1	1	0	0	0	0	copy fasta	PTPN3	chr9	109370700	109503307
PTPN3_chr9_109370700_109503307	0/0	t0052	3969	1	1	0	0	0	0	copy fasta	PTPN3	chr9	109370700	109503307
PTPN3_chr9_109370700_109503307	0/0	t0053	3957	1	1	0	0	0	0	copy fasta	PTPN3	chr9	109370700	109503307
PTPN3_chr9_109370700_109503307	0/0	t0054	3959	1	1	0	0	0	0	copy fasta	PTPN3	chr9	109370700	109503307
PTPN4_chr2_119754922_119989899	0/1	t0001	8311	77	9	20	34	3	10	copy fasta	PTPN4	chr2	119754922	119989899
PTPN4_chr2_119754922_119989899	0/0	t0002	8312	62	16	14	23	2	7	copy fasta	PTPN4	chr2	119754922	119989899
PTPN4_chr2_119754922_119989899	0/0	t0003	8311	18	1	2	8	1	6	copy fasta	PTPN4	chr2	119754922	119989899
PTPN4_chr2_119754922_119989899	0/0	t0004	8312	7	6	1	0	0	0	copy fasta	PTPN4	chr2	119754922	119989899
PTPN4_chr2_119754922_119989899	0/0	t0005	8312	7	6	1	0	0	0	copy fasta	PTPN4	chr2	119754922	119989899
PTPN4_chr2_119754922_119989899	0/0	t0006	8312	5	4	1	0	0	0	copy fasta	PTPN4	chr2	119754922	119989899
PTPN4_chr2_119754922_119989899	0/0	t0007	8312	5	0	0	5	0	0	copy fasta	PTPN4	chr2	119754922	119989899
PTPN4_chr2_119754922_119989899	0/0	t0008	8311	5	4	1	0	0	0	copy fasta	PTPN4	chr2	119754922	119989899
PTPN4_chr2_119754922_119989899	0/0	t0009	8311	4	4	0	0	0	0	copy fasta	PTPN4	chr2	119754922	119989899
PTPN4_chr2_119754922_119989899	0/0	t0010	8311	4	3	0	0	0	1	copy fasta	PTPN4	chr2	119754922	119989899
PTPN4_chr2_119754922_119989899	0/0	t0011	8312	3	3	0	0	0	0	copy fasta	PTPN4	chr2	119754922	119989899
PTPN4_chr2_119754922_119989899	0/0	t0012	8310	3	3	0	0	0	0	copy fasta	PTPN4	chr2	119754922	119989899
PTPN4_chr2_119754922_119989899	0/0	t0013	8311	3	1	0	2	0	0	copy fasta	PTPN4	chr2	119754922	119989899
PTPN4_chr2_119754922_119989899	0/0	t0014	8312	2	2	0	0	0	0	copy fasta	PTPN4	chr2	119754922	119989899
PTPN4_chr2_119754922_119989899	0/0	t0015	8312	2	0	2	0	0	0	copy fasta	PTPN4	chr2	119754922	119989899
PTPN4_chr2_119754922_119989899	0/0	t0016	8312	2	2	0	0	0	0	copy fasta	PTPN4	chr2	119754922	119989899
PTPN4_chr2_119754922_119989899	0/0	t0017	8311	2	2	0	0	0	0	copy fasta	PTPN4	chr2	119754922	119989899
PTPN4_chr2_119754922_119989899	0/0	t0018	8312	1	0	0	1	0	0	copy fasta	PTPN4	chr2	119754922	119989899
PTPN4_chr2_119754922_119989899	0/0	t0019	8312	1	0	1	0	0	0	copy fasta	PTPN4	chr2	119754922	119989899
PTPN4_chr2_119754922_119989899	0/0	t0020	8312	1	0	1	0	0	0	copy fasta	PTPN4	chr2	119754922	119989899
PTPN4_chr2_119754922_119989899	0/0	t0021	8312	1	1	0	0	0	0	copy fasta	PTPN4	chr2	119754922	119989899
PTPN4_chr2_119754922_119989899	0/0	t0022	8280	1	0	1	0	0	0	copy fasta	PTPN4	chr2	119754922	119989899
PTPN4_chr2_119754922_119989899	0/0	t0023	8312	1	0	1	0	0	0	copy fasta	PTPN4	chr2	119754922	119989899
PTPN4_chr2_119754922_119989899	0/0	t0024	8312	1	0	0	1	0	0	copy fasta	PTPN4	chr2	119754922	119989899
PTPN4_chr2_119754922_119989899	0/0	t0025	8312	1	0	0	1	0	0	copy fasta	PTPN4	chr2	119754922	119989899
PTPN4_chr2_119754922_119989899	0/0	t0026	8312	1	0	0	1	0	0	copy fasta	PTPN4	chr2	119754922	119989899
PTPN4_chr2_119754922_119989899	0/0	t0027	8312	1	0	1	0	0	0	copy fasta	PTPN4	chr2	119754922	119989899
PTPN4_chr2_119754922_119989899	0/0	t0028	8312	1	0	1	0	0	0	copy fasta	PTPN4	chr2	119754922	119989899
PTPN4_chr2_119754922_119989899	0/0	t0029	8313	1	0	0	1	0	0	copy fasta	PTPN4	chr2	119754922	119989899
PTPN4_chr2_119754922_119989899	0/0	t0030	8313	1	1	0	0	0	0	copy fasta	PTPN4	chr2	119754922	119989899
PTPN4_chr2_119754922_119989899	0/0	t0031	8311	1	1	0	0	0	0	copy fasta	PTPN4	chr2	119754922	119989899
PTPN4_chr2_119754922_119989899	0/0	t0032	8311	1	1	0	0	0	0	copy fasta	PTPN4	chr2	119754922	119989899
PTPN4_chr2_119754922_119989899	0/0	t0033	8311	1	1	0	0	0	0	copy fasta	PTPN4	chr2	119754922	119989899
PTPN4_chr2_119754922_119989899	0/0	t0034	8311	1	1	0	0	0	0	copy fasta	PTPN4	chr2	119754922	119989899
PTPN4_chr2_119754922_119989899	0/0	t0035	8296	1	1	0	0	0	0	copy fasta	PTPN4	chr2	119754922	119989899
PTPN4_chr2_119754922_119989899	0/0	t0036	8312	1	0	1	0	0	0	copy fasta	PTPN4	chr2	119754922	119989899
PTPN4_chr2_119754922_119989899	0/0	t0037	8312	1	1	0	0	0	0	copy fasta	PTPN4	chr2	119754922	119989899