JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PTPN4_chr2_119754922_119989899	1/0	t0038	8310	1	0	0	0	0	0	copy fasta	PTPN4	chr2	119754922	119989899
PTPN4_chr2_119754922_119989899	0/0	t0039	8312	1	1	0	0	0	0	copy fasta	PTPN4	chr2	119754922	119989899
PTPN4_chr2_119754922_119989899	0/0	t0040	8311	1	1	0	0	0	0	copy fasta	PTPN4	chr2	119754922	119989899
PTPN4_chr2_119754922_119989899	0/0	t0041	8311	1	0	0	1	0	0	copy fasta	PTPN4	chr2	119754922	119989899
PTPN4_chr2_119754922_119989899	0/0	t0042	8312	1	0	0	0	0	1	copy fasta	PTPN4	chr2	119754922	119989899
PTPN4_chr2_119754922_119989899	0/0	t0043	8311	1	0	1	0	0	0	copy fasta	PTPN4	chr2	119754922	119989899
PTPN4_chr2_119754922_119989899	0/0	t0044	8311	1	1	0	0	0	0	copy fasta	PTPN4	chr2	119754922	119989899
PTPN4_chr2_119754922_119989899	0/0	t0045	8311	1	0	1	0	0	0	copy fasta	PTPN4	chr2	119754922	119989899
PTPN4_chr2_119754922_119989899	0/0	t0046	8311	1	0	0	0	0	1	copy fasta	PTPN4	chr2	119754922	119989899
PTPN4_chr2_119754922_119989899	0/0	t0047	8311	1	0	0	1	0	0	copy fasta	PTPN4	chr2	119754922	119989899
PTPN4_chr2_119754922_119989899	0/0	t0048	8311	1	0	0	1	0	0	copy fasta	PTPN4	chr2	119754922	119989899
PTPN4_chr2_119754922_119989899	0/0	t0049	8311	1	0	0	1	0	0	copy fasta	PTPN4	chr2	119754922	119989899
PTPN4_chr2_119754922_119989899	0/0	t0050	8311	1	0	0	1	0	0	copy fasta	PTPN4	chr2	119754922	119989899
PTPN4_chr2_119754922_119989899	0/0	t0051	8311	1	1	0	0	0	0	copy fasta	PTPN4	chr2	119754922	119989899
PTPN4_chr2_119754922_119989899	0/0	t0052	8311	1	0	0	1	0	0	copy fasta	PTPN4	chr2	119754922	119989899
PTPN4_chr2_119754922_119989899	0/0	t0053	8311	1	1	0	0	0	0	copy fasta	PTPN4	chr2	119754922	119989899
PTPN4_chr2_119754922_119989899	0/0	t0054	8311	1	1	0	0	0	0	copy fasta	PTPN4	chr2	119754922	119989899
PTPN4_chr2_119754922_119989899	0/0	t0055	8311	1	0	0	0	0	1	copy fasta	PTPN4	chr2	119754922	119989899
PTPN4_chr2_119754922_119989899	0/0	t0056	8311	1	0	1	0	0	0	copy fasta	PTPN4	chr2	119754922	119989899
PTPN4_chr2_119754922_119989899	0/0	t0057	8311	1	0	0	1	0	0	copy fasta	PTPN4	chr2	119754922	119989899
PTPN4_chr2_119754922_119989899	0/0	t0058	8311	1	0	0	0	0	1	copy fasta	PTPN4	chr2	119754922	119989899
PTPN5_chr11_18722928_18796798	1/1	t0001	1394	354	73	68	159	18	34	copy fasta	PTPN5	chr11	18722928	18796798
PTPN5_chr11_18722928_18796798	0/0	t0002	1394	14	13	1	0	0	0	copy fasta	PTPN5	chr11	18722928	18796798
PTPN5_chr11_18722928_18796798	0/0	t0003	1394	2	0	0	2	0	0	copy fasta	PTPN5	chr11	18722928	18796798
PTPN5_chr11_18722928_18796798	0/0	t0004	1394	2	0	0	1	0	1	copy fasta	PTPN5	chr11	18722928	18796798
PTPN5_chr11_18722928_18796798	0/0	t0005	1394	2	2	0	0	0	0	copy fasta	PTPN5	chr11	18722928	18796798
PTPN5_chr11_18722928_18796798	0/0	t0006	1394	2	0	0	1	0	1	copy fasta	PTPN5	chr11	18722928	18796798
PTPN5_chr11_18722928_18796798	0/0	t0007	1394	2	2	0	0	0	0	copy fasta	PTPN5	chr11	18722928	18796798
PTPN5_chr11_18722928_18796798	0/0	t0008	1384	1	1	0	0	0	0	copy fasta	PTPN5	chr11	18722928	18796798
PTPN5_chr11_18722928_18796798	0/0	t0009	1394	1	1	0	0	0	0	copy fasta	PTPN5	chr11	18722928	18796798
PTPN5_chr11_18722928_18796798	0/0	t0010	1394	1	0	0	1	0	0	copy fasta	PTPN5	chr11	18722928	18796798
PTPN5_chr11_18722928_18796798	0/0	t0011	1394	1	1	0	0	0	0	copy fasta	PTPN5	chr11	18722928	18796798
PTPN5_chr11_18722928_18796798	0/0	t0012	1394	1	1	0	0	0	0	copy fasta	PTPN5	chr11	18722928	18796798
PTPN5_chr11_18722928_18796798	0/0	t0013	1394	1	1	0	0	0	0	copy fasta	PTPN5	chr11	18722928	18796798
PTPN5_chr11_18722928_18796798	0/0	t0014	1394	1	0	0	1	0	0	copy fasta	PTPN5	chr11	18722928	18796798
PTPN5_chr11_18722928_18796798	0/0	t0015	1394	1	1	0	0	0	0	copy fasta	PTPN5	chr11	18722928	18796798
PTPN5_chr11_18722928_18796798	0/0	t0016	1394	1	0	0	1	0	0	copy fasta	PTPN5	chr11	18722928	18796798
PTPN5_chr11_18722928_18796798	0/0	t0017	1410	1	0	1	0	0	0	copy fasta	PTPN5	chr11	18722928	18796798
PTPN6_chr12_6946356_6966316	1/0	t0001	374	377	86	70	162	12	46	copy fasta	PTPN6	chr12	6946356	6966316
PTPN6_chr12_6946356_6966316	0/0	t0002	374	5	5	0	0	0	0	copy fasta	PTPN6	chr12	6946356	6966316
PTPN6_chr12_6946356_6966316	0/0	t0003	374	3	3	0	0	0	0	copy fasta	PTPN6	chr12	6946356	6966316
PTPN7_chr1_202142016_202165602	0/0	t0001	1701	263	50	35	143	11	24	copy fasta	PTPN7	chr1	202142016	202165602
PTPN7_chr1_202142016_202165602	0/0	t0002	1701	109	34	20	44	1	10	copy fasta	PTPN7	chr1	202142016	202165602
PTPN7_chr1_202142016_202165602	0/0	t0003	1701	61	4	28	10	6	13	copy fasta	PTPN7	chr1	202142016	202165602
PTPN7_chr1_202142016_202165602	0/0	t0004	1701	8	7	1	0	0	0	copy fasta	PTPN7	chr1	202142016	202165602
PTPN7_chr1_202142016_202165602	0/0	t0005	1701	3	3	0	0	0	0	copy fasta	PTPN7	chr1	202142016	202165602
PTPN7_chr1_202142016_202165602	0/0	t0006	1701	1	0	0	1	0	0	copy fasta	PTPN7	chr1	202142016	202165602
PTPN7_chr1_202142016_202165602	0/0	t0007	1701	1	0	0	1	0	0	copy fasta	PTPN7	chr1	202142016	202165602
PTPN7_chr1_202142016_202165602	0/0	t0008	1701	1	0	0	1	0	0	copy fasta	PTPN7	chr1	202142016	202165602
PTPN7_chr1_202142016_202165602	0/0	t0009	1701	1	0	1	0	0	0	copy fasta	PTPN7	chr1	202142016	202165602