JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PTPN7_chr1_202142016_202165602	0/0	t0010	1701	1	1	0	0	0	0	copy fasta	PTPN7	chr1	202142016	202165602
PTPN7_chr1_202142016_202165602	0/0	t0011	1701	1	0	0	1	0	0	copy fasta	PTPN7	chr1	202142016	202165602
PTPN7_chr1_202142016_202165602	0/0	t0012	1701	1	0	0	1	0	0	copy fasta	PTPN7	chr1	202142016	202165602
PTPN7_chr1_202142016_202165602	0/0	t0013	1701	1	0	1	0	0	0	copy fasta	PTPN7	chr1	202142016	202165602
PTPN7_chr1_202142016_202165602	0/0	t0014	1701	1	1	0	0	0	0	copy fasta	PTPN7	chr1	202142016	202165602
PTPN7_chr1_202142016_202165602	0/0	t0015	1701	1	0	0	0	0	1	copy fasta	PTPN7	chr1	202142016	202165602
PTPN9_chr15_75458251_75584315	0/0	t0001	6058	81	13	6	55	2	5	copy fasta	PTPN9	chr15	75458251	75584315
PTPN9_chr15_75458251_75584315	1/1	t0002	6058	65	11	10	34	2	6	copy fasta	PTPN9	chr15	75458251	75584315
PTPN9_chr15_75458251_75584315	0/0	t0003	6058	28	16	3	2	1	6	copy fasta	PTPN9	chr15	75458251	75584315
PTPN9_chr15_75458251_75584315	0/0	t0004	6058	23	0	8	14	0	1	copy fasta	PTPN9	chr15	75458251	75584315
PTPN9_chr15_75458251_75584315	0/0	t0005	6058	21	0	1	18	0	2	copy fasta	PTPN9	chr15	75458251	75584315
PTPN9_chr15_75458251_75584315	0/0	t0006	6058	15	2	7	0	3	3	copy fasta	PTPN9	chr15	75458251	75584315
PTPN9_chr15_75458251_75584315	0/0	t0007	6060	8	0	4	4	0	0	copy fasta	PTPN9	chr15	75458251	75584315
PTPN9_chr15_75458251_75584315	0/0	t0008	6058	7	6	1	0	0	0	copy fasta	PTPN9	chr15	75458251	75584315
PTPN9_chr15_75458251_75584315	0/0	t0009	6058	7	1	2	0	1	3	copy fasta	PTPN9	chr15	75458251	75584315
PTPN9_chr15_75458251_75584315	0/0	t0010	6058	6	0	4	0	0	2	copy fasta	PTPN9	chr15	75458251	75584315
PTPN9_chr15_75458251_75584315	0/0	t0011	6058	6	5	1	0	0	0	copy fasta	PTPN9	chr15	75458251	75584315
PTPN9_chr15_75458251_75584315	0/0	t0012	6058	5	4	1	0	0	0	copy fasta	PTPN9	chr15	75458251	75584315
PTPN9_chr15_75458251_75584315	0/0	t0013	6058	5	0	0	5	0	0	copy fasta	PTPN9	chr15	75458251	75584315
PTPN9_chr15_75458251_75584315	0/0	t0014	6058	4	0	0	4	0	0	copy fasta	PTPN9	chr15	75458251	75584315
PTPN9_chr15_75458251_75584315	0/0	t0015	6058	4	0	1	1	1	1	copy fasta	PTPN9	chr15	75458251	75584315
PTPN9_chr15_75458251_75584315	0/0	t0016	6054	3	2	1	0	0	0	copy fasta	PTPN9	chr15	75458251	75584315
PTPN9_chr15_75458251_75584315	0/0	t0017	6058	2	0	0	2	0	0	copy fasta	PTPN9	chr15	75458251	75584315
PTPN9_chr15_75458251_75584315	0/0	t0018	6058	2	1	0	1	0	0	copy fasta	PTPN9	chr15	75458251	75584315
PTPN9_chr15_75458251_75584315	0/0	t0019	6058	2	0	2	0	0	0	copy fasta	PTPN9	chr15	75458251	75584315
PTPN9_chr15_75458251_75584315	0/0	t0020	6058	2	0	0	2	0	0	copy fasta	PTPN9	chr15	75458251	75584315
PTPN9_chr15_75458251_75584315	0/0	t0021	6058	2	1	1	0	0	0	copy fasta	PTPN9	chr15	75458251	75584315
PTPN9_chr15_75458251_75584315	0/0	t0022	6058	1	1	0	0	0	0	copy fasta	PTPN9	chr15	75458251	75584315
PTPN9_chr15_75458251_75584315	0/0	t0023	6058	1	1	0	0	0	0	copy fasta	PTPN9	chr15	75458251	75584315
PTPN9_chr15_75458251_75584315	0/0	t0024	6058	1	0	0	0	0	1	copy fasta	PTPN9	chr15	75458251	75584315
PTPN9_chr15_75458251_75584315	0/0	t0025	6058	1	0	0	1	0	0	copy fasta	PTPN9	chr15	75458251	75584315
PTPN9_chr15_75458251_75584315	0/0	t0026	6058	1	0	1	0	0	0	copy fasta	PTPN9	chr15	75458251	75584315
PTPN9_chr15_75458251_75584315	0/0	t0027	6058	1	0	0	0	0	1	copy fasta	PTPN9	chr15	75458251	75584315
PTPN9_chr15_75458251_75584315	0/0	t0028	6058	1	0	1	0	0	0	copy fasta	PTPN9	chr15	75458251	75584315
PTPN9_chr15_75458251_75584315	0/0	t0029	6058	1	1	0	0	0	0	copy fasta	PTPN9	chr15	75458251	75584315
PTPN9_chr15_75458251_75584315	0/0	t0030	6058	1	1	0	0	0	0	copy fasta	PTPN9	chr15	75458251	75584315
PTPN9_chr15_75458251_75584315	0/0	t0031	6058	1	1	0	0	0	0	copy fasta	PTPN9	chr15	75458251	75584315
PTPN9_chr15_75458251_75584315	0/0	t0032	6058	1	0	0	0	0	1	copy fasta	PTPN9	chr15	75458251	75584315
PTPN9_chr15_75458251_75584315	0/0	t0033	6058	1	0	0	1	0	0	copy fasta	PTPN9	chr15	75458251	75584315
PTPN9_chr15_75458251_75584315	0/0	t0034	6058	1	1	0	0	0	0	copy fasta	PTPN9	chr15	75458251	75584315
PTPN9_chr15_75458251_75584315	0/0	t0035	6058	1	1	0	0	0	0	copy fasta	PTPN9	chr15	75458251	75584315
PTPN9_chr15_75458251_75584315	0/0	t0036	6058	1	1	0	0	0	0	copy fasta	PTPN9	chr15	75458251	75584315
PTPN9_chr15_75458251_75584315	0/0	t0037	6058	1	0	1	0	0	0	copy fasta	PTPN9	chr15	75458251	75584315
PTPN9_chr15_75458251_75584315	0/0	t0038	6058	1	0	0	1	0	0	copy fasta	PTPN9	chr15	75458251	75584315
PTPN9_chr15_75458251_75584315	0/0	t0039	6069	1	0	0	1	0	0	copy fasta	PTPN9	chr15	75458251	75584315
PTPN9_chr15_75458251_75584315	0/0	t0040	6058	1	1	0	0	0	0	copy fasta	PTPN9	chr15	75458251	75584315
PTPN9_chr15_75458251_75584315	0/0	t0041	6058	1	1	0	0	0	0	copy fasta	PTPN9	chr15	75458251	75584315
PTPN9_chr15_75458251_75584315	0/0	t0042	6058	1	1	0	0	0	0	copy fasta	PTPN9	chr15	75458251	75584315
PTPN9_chr15_75458251_75584315	0/0	t0043	6058	1	1	0	0	0	0	copy fasta	PTPN9	chr15	75458251	75584315
PTPN9_chr15_75458251_75584315	0/0	t0044	6060	1	1	0	0	0	0	copy fasta	PTPN9	chr15	75458251	75584315