JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PTPN9_chr15_75458251_75584315	0/0	t0045	6060	1	1	0	0	0	0	copy fasta	PTPN9	chr15	75458251	75584315
PTPN9_chr15_75458251_75584315	0/0	t0046	6058	1	1	0	0	0	0	copy fasta	PTPN9	chr15	75458251	75584315
PTPN9_chr15_75458251_75584315	0/0	t0047	6058	1	1	0	0	0	0	copy fasta	PTPN9	chr15	75458251	75584315
PTPN9_chr15_75458251_75584315	0/0	t0048	6058	1	0	0	1	0	0	copy fasta	PTPN9	chr15	75458251	75584315
PTPN9_chr15_75458251_75584315	0/0	t0049	6058	1	0	0	1	0	0	copy fasta	PTPN9	chr15	75458251	75584315
PTPRA_chr20_2868481_3043669	1/0	t0001	945	314	76	50	142	14	31	copy fasta	PTPRA	chr20	2868481	3043669
PTPRA_chr20_2868481_3043669	0/0	t0002	945	22	1	12	8	0	1	copy fasta	PTPRA	chr20	2868481	3043669
PTPRA_chr20_2868481_3043669	0/1	t0003	945	8	0	0	7	0	0	copy fasta	PTPRA	chr20	2868481	3043669
PTPRA_chr20_2868481_3043669	0/0	t0004	945	6	0	0	6	0	0	copy fasta	PTPRA	chr20	2868481	3043669
PTPRA_chr20_2868481_3043669	0/0	t0005	945	2	0	2	0	0	0	copy fasta	PTPRA	chr20	2868481	3043669
PTPRA_chr20_2868481_3043669	0/0	t0006	945	1	0	0	1	0	0	copy fasta	PTPRA	chr20	2868481	3043669
PTPRA_chr20_2868481_3043669	0/0	t0007	945	1	0	0	1	0	0	copy fasta	PTPRA	chr20	2868481	3043669
PTPRA_chr20_2868481_3043669	0/0	t0008	945	1	0	0	1	0	0	copy fasta	PTPRA	chr20	2868481	3043669
PTPRA_chr20_2868481_3043669	0/0	t0009	945	1	1	0	0	0	0	copy fasta	PTPRA	chr20	2868481	3043669
PTPRB_chr12_70510870_70642429	0/0	t0001	5654	97	30	18	42	1	6	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	t0002	5655	46	3	12	22	3	6	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/1	t0003	5659	39	0	2	35	0	1	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	t0004	5654	26	1	5	13	0	7	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	t0005	5654	15	4	6	0	3	2	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	t0006	5655	14	14	0	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	t0007	5654	7	7	0	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	t0008	5659	4	4	0	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	t0009	5654	4	0	2	0	1	1	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	1/0	t0010	5654	4	0	3	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	t0011	5654	3	1	2	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	t0012	5654	3	3	0	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	t0013	5658	2	2	0	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	t0014	5654	2	1	0	1	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	t0015	5654	2	0	1	0	1	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	t0016	5654	2	0	0	0	0	2	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	t0017	5657	2	2	0	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	t0018	5655	1	1	0	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	t0019	5655	1	1	0	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	t0020	5655	1	1	0	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	t0021	5655	1	0	0	1	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	t0022	5654	1	0	0	1	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	t0023	5659	1	1	0	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	t0024	5659	1	1	0	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	t0025	5659	1	0	1	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	t0026	5654	1	1	0	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	t0027	5654	1	1	0	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	t0028	5654	1	1	0	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	t0029	5655	1	1	0	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	t0030	5654	1	1	0	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	t0031	5654	1	0	0	1	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	t0032	5654	1	0	1	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	t0033	5654	1	0	0	0	0	1	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	t0034	5654	1	0	0	1	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	t0035	5654	1	0	0	1	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	t0036	5655	1	0	0	1	0	0	copy fasta	PTPRB	chr12	70510870	70642429