JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PTPRB_chr12_70510870_70642429	0/0	t0037	5655	1	0	0	1	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	t0038	5654	1	1	0	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	t0039	5654	1	0	0	0	1	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	t0040	5657	1	1	0	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	t0041	5654	1	0	0	1	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	t0042	5654	1	1	0	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	t0043	5654	1	0	0	1	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	t0044	5654	1	0	1	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	t0045	5654	1	1	0	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRCAP_chr11_67430510_67442682	1/1	t0001	287	326	47	62	162	15	38	copy fasta	PTPRCAP	chr11	67430510	67442682
PTPRCAP_chr11_67430510_67442682	0/0	t0002	286	45	43	1	1	0	0	copy fasta	PTPRCAP	chr11	67430510	67442682
PTPRCAP_chr11_67430510_67442682	0/0	t0003	287	3	0	0	3	0	0	copy fasta	PTPRCAP	chr11	67430510	67442682
PTPRCAP_chr11_67430510_67442682	0/0	t0004	287	1	0	0	0	1	0	copy fasta	PTPRCAP	chr11	67430510	67442682
PTPRCAP_chr11_67430510_67442682	0/0	t0005	287	1	1	0	0	0	0	copy fasta	PTPRCAP	chr11	67430510	67442682
PTPRCAP_chr11_67430510_67442682	0/0	t0006	287	1	1	0	0	0	0	copy fasta	PTPRCAP	chr11	67430510	67442682
PTPRCAP_chr11_67430510_67442682	0/0	t0007	287	1	0	1	0	0	0	copy fasta	PTPRCAP	chr11	67430510	67442682
PTPRC_chr1_198634040_198762476	1/1	t0001	1437	175	40	43	66	7	17	copy fasta	PTPRC	chr1	198634040	198762476
PTPRC_chr1_198634040_198762476	0/0	t0002	1436	55	18	7	27	0	3	copy fasta	PTPRC	chr1	198634040	198762476
PTPRC_chr1_198634040_198762476	0/0	t0003	1439	26	2	14	7	0	3	copy fasta	PTPRC	chr1	198634040	198762476
PTPRC_chr1_198634040_198762476	0/0	t0004	1437	10	2	6	0	1	1	copy fasta	PTPRC	chr1	198634040	198762476
PTPRC_chr1_198634040_198762476	0/0	t0005	1437	7	7	0	0	0	0	copy fasta	PTPRC	chr1	198634040	198762476
PTPRC_chr1_198634040_198762476	0/0	t0006	1437	5	0	1	4	0	0	copy fasta	PTPRC	chr1	198634040	198762476
PTPRC_chr1_198634040_198762476	0/0	t0007	1438	4	0	1	0	2	1	copy fasta	PTPRC	chr1	198634040	198762476
PTPRC_chr1_198634040_198762476	0/0	t0008	1437	3	0	2	1	0	0	copy fasta	PTPRC	chr1	198634040	198762476
PTPRC_chr1_198634040_198762476	0/0	t0009	1437	2	2	0	0	0	0	copy fasta	PTPRC	chr1	198634040	198762476
PTPRC_chr1_198634040_198762476	0/0	t0010	1437	2	0	0	2	0	0	copy fasta	PTPRC	chr1	198634040	198762476
PTPRC_chr1_198634040_198762476	0/0	t0011	1436	2	0	0	2	0	0	copy fasta	PTPRC	chr1	198634040	198762476
PTPRC_chr1_198634040_198762476	0/0	t0012	1437	1	0	0	1	0	0	copy fasta	PTPRC	chr1	198634040	198762476
PTPRC_chr1_198634040_198762476	0/0	t0013	1439	1	1	0	0	0	0	copy fasta	PTPRC	chr1	198634040	198762476
PTPRC_chr1_198634040_198762476	0/0	t0014	1437	1	0	0	0	0	1	copy fasta	PTPRC	chr1	198634040	198762476
PTPRC_chr1_198634040_198762476	0/0	t0015	1438	1	1	0	0	0	0	copy fasta	PTPRC	chr1	198634040	198762476
PTPRC_chr1_198634040_198762476	0/0	t0016	1437	1	1	0	0	0	0	copy fasta	PTPRC	chr1	198634040	198762476
PTPRD_chr9_8309246_10618002	0/0	t0001	4649	4	3	0	0	0	1	copy fasta	PTPRD	chr9	8309246	10618002
PTPRD_chr9_8309246_10618002	0/0	t0002	4650	3	2	1	0	0	0	copy fasta	PTPRD	chr9	8309246	10618002
PTPRD_chr9_8309246_10618002	0/0	t0003	4651	2	0	2	0	0	0	copy fasta	PTPRD	chr9	8309246	10618002
PTPRD_chr9_8309246_10618002	0/0	t0004	4649	2	2	0	0	0	0	copy fasta	PTPRD	chr9	8309246	10618002
PTPRD_chr9_8309246_10618002	0/0	t0005	4649	2	2	0	0	0	0	copy fasta	PTPRD	chr9	8309246	10618002
PTPRD_chr9_8309246_10618002	0/0	t0006	4651	1	0	0	0	0	1	copy fasta	PTPRD	chr9	8309246	10618002
PTPRD_chr9_8309246_10618002	0/0	t0007	4650	1	1	0	0	0	0	copy fasta	PTPRD	chr9	8309246	10618002
PTPRD_chr9_8309246_10618002	0/0	t0008	4651	1	0	1	0	0	0	copy fasta	PTPRD	chr9	8309246	10618002
PTPRD_chr9_8309246_10618002	0/0	t0009	4660	1	1	0	0	0	0	copy fasta	PTPRD	chr9	8309246	10618002
PTPRD_chr9_8309246_10618002	0/0	t0010	4651	1	0	1	0	0	0	copy fasta	PTPRD	chr9	8309246	10618002
PTPRD_chr9_8309246_10618002	0/0	t0011	4651	1	0	1	0	0	0	copy fasta	PTPRD	chr9	8309246	10618002
PTPRD_chr9_8309246_10618002	0/0	t0012	4649	1	0	1	0	0	0	copy fasta	PTPRD	chr9	8309246	10618002
PTPRD_chr9_8309246_10618002	0/0	t0013	4647	1	1	0	0	0	0	copy fasta	PTPRD	chr9	8309246	10618002
PTPRD_chr9_8309246_10618002	0/0	t0014	4650	1	1	0	0	0	0	copy fasta	PTPRD	chr9	8309246	10618002
PTPRD_chr9_8309246_10618002	0/0	t0015	4660	1	1	0	0	0	0	copy fasta	PTPRD	chr9	8309246	10618002
PTPRD_chr9_8309246_10618002	0/0	t0016	4651	1	0	0	0	0	1	copy fasta	PTPRD	chr9	8309246	10618002
PTPRD_chr9_8309246_10618002	0/0	t0017	4649	1	1	0	0	0	0	copy fasta	PTPRD	chr9	8309246	10618002
PTPRD_chr9_8309246_10618002	0/0	t0018	4647	1	1	0	0	0	0	copy fasta	PTPRD	chr9	8309246	10618002