JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PTPRD_chr9_8309246_10618002	0/0	t0019	4646	1	0	1	0	0	0	copy fasta	PTPRD	chr9	8309246	10618002
PTPRD_chr9_8309246_10618002	0/0	t0020	4651	1	1	0	0	0	0	copy fasta	PTPRD	chr9	8309246	10618002
PTPRD_chr9_8309246_10618002	0/0	t0021	4654	1	1	0	0	0	0	copy fasta	PTPRD	chr9	8309246	10618002
PTPRD_chr9_8309246_10618002	0/0	t0022	4649	1	1	0	0	0	0	copy fasta	PTPRD	chr9	8309246	10618002
PTPRD_chr9_8309246_10618002	0/0	t0023	4649	1	0	1	0	0	0	copy fasta	PTPRD	chr9	8309246	10618002
PTPRD_chr9_8309246_10618002	0/0	t0024	4651	1	1	0	0	0	0	copy fasta	PTPRD	chr9	8309246	10618002
PTPRD_chr9_8309246_10618002	0/0	t0025	4660	1	0	1	0	0	0	copy fasta	PTPRD	chr9	8309246	10618002
PTPRD_chr9_8309246_10618002	0/0	t0026	4651	1	0	0	0	0	1	copy fasta	PTPRD	chr9	8309246	10618002
PTPRE_chr10_127902103_128090855	0/0	t0001	3177	43	9	13	10	1	10	copy fasta	PTPRE	chr10	127902103	128090855
PTPRE_chr10_127902103_128090855	0/0	t0002	3187	41	9	7	14	7	4	copy fasta	PTPRE	chr10	127902103	128090855
PTPRE_chr10_127902103_128090855	0/0	t0003	3177	34	2	7	21	0	4	copy fasta	PTPRE	chr10	127902103	128090855
PTPRE_chr10_127902103_128090855	1/0	t0004	3187	32	2	4	20	2	3	copy fasta	PTPRE	chr10	127902103	128090855
PTPRE_chr10_127902103_128090855	0/0	t0005	3188	21	15	0	6	0	0	copy fasta	PTPRE	chr10	127902103	128090855
PTPRE_chr10_127902103_128090855	0/0	t0006	3179	20	6	3	8	0	3	copy fasta	PTPRE	chr10	127902103	128090855
PTPRE_chr10_127902103_128090855	0/0	t0007	3188	11	2	0	9	0	0	copy fasta	PTPRE	chr10	127902103	128090855
PTPRE_chr10_127902103_128090855	0/0	t0008	3187	11	0	5	0	0	6	copy fasta	PTPRE	chr10	127902103	128090855
PTPRE_chr10_127902103_128090855	0/0	t0009	3179	10	8	2	0	0	0	copy fasta	PTPRE	chr10	127902103	128090855
PTPRE_chr10_127902103_128090855	0/0	t0010	3187	9	2	3	0	0	4	copy fasta	PTPRE	chr10	127902103	128090855
PTPRE_chr10_127902103_128090855	0/0	t0011	3187	9	9	0	0	0	0	copy fasta	PTPRE	chr10	127902103	128090855
PTPRE_chr10_127902103_128090855	0/0	t0012	3179	6	0	4	1	0	1	copy fasta	PTPRE	chr10	127902103	128090855
PTPRE_chr10_127902103_128090855	0/0	t0013	3179	6	3	3	0	0	0	copy fasta	PTPRE	chr10	127902103	128090855
PTPRE_chr10_127902103_128090855	0/0	t0014	3187	5	0	0	5	0	0	copy fasta	PTPRE	chr10	127902103	128090855
PTPRE_chr10_127902103_128090855	0/0	t0015	3179	4	3	0	0	1	0	copy fasta	PTPRE	chr10	127902103	128090855
PTPRE_chr10_127902103_128090855	0/0	t0016	3187	3	0	2	1	0	0	copy fasta	PTPRE	chr10	127902103	128090855
PTPRE_chr10_127902103_128090855	0/0	t0017	3187	3	0	3	0	0	0	copy fasta	PTPRE	chr10	127902103	128090855
PTPRE_chr10_127902103_128090855	0/1	t0018	3186	3	1	1	0	0	0	copy fasta	PTPRE	chr10	127902103	128090855
PTPRE_chr10_127902103_128090855	0/0	t0019	3187	3	3	0	0	0	0	copy fasta	PTPRE	chr10	127902103	128090855
PTPRE_chr10_127902103_128090855	0/0	t0020	3177	2	2	0	0	0	0	copy fasta	PTPRE	chr10	127902103	128090855
PTPRE_chr10_127902103_128090855	0/0	t0021	3179	2	2	0	0	0	0	copy fasta	PTPRE	chr10	127902103	128090855
PTPRE_chr10_127902103_128090855	0/0	t0022	3179	2	2	0	0	0	0	copy fasta	PTPRE	chr10	127902103	128090855
PTPRE_chr10_127902103_128090855	0/0	t0023	3187	1	1	0	0	0	0	copy fasta	PTPRE	chr10	127902103	128090855
PTPRE_chr10_127902103_128090855	0/0	t0024	3187	1	0	1	0	0	0	copy fasta	PTPRE	chr10	127902103	128090855
PTPRE_chr10_127902103_128090855	0/0	t0025	3186	1	0	0	1	0	0	copy fasta	PTPRE	chr10	127902103	128090855
PTPRE_chr10_127902103_128090855	0/0	t0026	3179	1	0	1	0	0	0	copy fasta	PTPRE	chr10	127902103	128090855
PTPRE_chr10_127902103_128090855	0/0	t0027	3179	1	0	0	0	1	0	copy fasta	PTPRE	chr10	127902103	128090855
PTPRE_chr10_127902103_128090855	0/0	t0028	3180	1	0	0	1	0	0	copy fasta	PTPRE	chr10	127902103	128090855
PTPRE_chr10_127902103_128090855	0/0	t0029	3179	1	1	0	0	0	0	copy fasta	PTPRE	chr10	127902103	128090855
PTPRE_chr10_127902103_128090855	0/0	t0030	3179	1	1	0	0	0	0	copy fasta	PTPRE	chr10	127902103	128090855
PTPRE_chr10_127902103_128090855	0/0	t0031	3177	1	0	0	1	0	0	copy fasta	PTPRE	chr10	127902103	128090855
PTPRE_chr10_127902103_128090855	0/0	t0032	3177	1	0	1	0	0	0	copy fasta	PTPRE	chr10	127902103	128090855
PTPRE_chr10_127902103_128090855	0/0	t0033	3187	1	0	0	1	0	0	copy fasta	PTPRE	chr10	127902103	128090855
PTPRE_chr10_127902103_128090855	0/0	t0034	3177	1	0	0	1	0	0	copy fasta	PTPRE	chr10	127902103	128090855
PTPRE_chr10_127902103_128090855	0/0	t0035	3177	1	1	0	0	0	0	copy fasta	PTPRE	chr10	127902103	128090855
PTPRE_chr10_127902103_128090855	0/0	t0036	3182	1	1	0	0	0	0	copy fasta	PTPRE	chr10	127902103	128090855
PTPRE_chr10_127902103_128090855	0/0	t0037	3177	1	1	0	0	0	0	copy fasta	PTPRE	chr10	127902103	128090855
PTPRE_chr10_127902103_128090855	0/0	t0038	3179	1	1	0	0	0	0	copy fasta	PTPRE	chr10	127902103	128090855
PTPRE_chr10_127902103_128090855	0/0	t0039	3184	1	0	0	0	0	1	copy fasta	PTPRE	chr10	127902103	128090855
PTPRE_chr10_127902103_128090855	0/0	t0040	3177	1	0	0	0	0	1	copy fasta	PTPRE	chr10	127902103	128090855
PTPRE_chr10_127902103_128090855	0/0	t0041	3177	1	1	0	0	0	0	copy fasta	PTPRE	chr10	127902103	128090855
PTPRE_chr10_127902103_128090855	0/0	t0042	3177	1	0	0	0	0	1	copy fasta	PTPRE	chr10	127902103	128090855