JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PTPRE_chr10_127902103_128090855	0/0	t0043	3180	1	0	1	0	0	0	copy fasta	PTPRE	chr10	127902103	128090855
PTPRE_chr10_127902103_128090855	0/0	t0044	3179	1	0	1	0	0	0	copy fasta	PTPRE	chr10	127902103	128090855
PTPRE_chr10_127902103_128090855	0/0	t0045	3177	1	1	0	0	0	0	copy fasta	PTPRE	chr10	127902103	128090855
PTPRE_chr10_127902103_128090855	0/0	t0046	3187	1	1	0	0	0	0	copy fasta	PTPRE	chr10	127902103	128090855
PTPRF_chr1_43525883_43628666	1/0	t0001	1997	11	0	5	1	0	4	copy fasta	PTPRF	chr1	43525883	43628666
PTPRF_chr1_43525883_43628666	0/0	t0002	1997	5	5	0	0	0	0	copy fasta	PTPRF	chr1	43525883	43628666
PTPRF_chr1_43525883_43628666	0/0	t0003	1991	2	1	1	0	0	0	copy fasta	PTPRF	chr1	43525883	43628666
PTPRF_chr1_43525883_43628666	0/0	t0004	1997	1	0	0	1	0	0	copy fasta	PTPRF	chr1	43525883	43628666
PTPRG_chr3_61556571_62302609	0/0	t0001	5020	37	17	7	5	2	6	copy fasta	PTPRG	chr3	61556571	62302609
PTPRG_chr3_61556571_62302609	0/0	t0002	5020	28	14	7	1	1	5	copy fasta	PTPRG	chr3	61556571	62302609
PTPRG_chr3_61556571_62302609	0/0	t0003	5020	5	1	2	0	1	1	copy fasta	PTPRG	chr3	61556571	62302609
PTPRG_chr3_61556571_62302609	0/0	t0004	5024	4	3	1	0	0	0	copy fasta	PTPRG	chr3	61556571	62302609
PTPRG_chr3_61556571_62302609	0/0	t0005	5021	3	3	0	0	0	0	copy fasta	PTPRG	chr3	61556571	62302609
PTPRG_chr3_61556571_62302609	0/0	t0006	5020	3	3	0	0	0	0	copy fasta	PTPRG	chr3	61556571	62302609
PTPRG_chr3_61556571_62302609	0/0	t0007	5020	3	3	0	0	0	0	copy fasta	PTPRG	chr3	61556571	62302609
PTPRG_chr3_61556571_62302609	0/0	t0008	5020	2	0	0	1	0	1	copy fasta	PTPRG	chr3	61556571	62302609
PTPRG_chr3_61556571_62302609	0/0	t0009	5020	1	1	0	0	0	0	copy fasta	PTPRG	chr3	61556571	62302609
PTPRG_chr3_61556571_62302609	0/0	t0010	5020	1	1	0	0	0	0	copy fasta	PTPRG	chr3	61556571	62302609
PTPRG_chr3_61556571_62302609	0/0	t0011	5020	1	0	1	0	0	0	copy fasta	PTPRG	chr3	61556571	62302609
PTPRG_chr3_61556571_62302609	0/0	t0012	5020	1	0	0	0	0	1	copy fasta	PTPRG	chr3	61556571	62302609
PTPRG_chr3_61556571_62302609	0/0	t0013	5020	1	0	1	0	0	0	copy fasta	PTPRG	chr3	61556571	62302609
PTPRG_chr3_61556571_62302609	0/0	t0014	5021	1	0	0	1	0	0	copy fasta	PTPRG	chr3	61556571	62302609
PTPRG_chr3_61556571_62302609	0/0	t0015	5020	1	1	0	0	0	0	copy fasta	PTPRG	chr3	61556571	62302609
PTPRG_chr3_61556571_62302609	0/0	t0016	5020	1	1	0	0	0	0	copy fasta	PTPRG	chr3	61556571	62302609
PTPRG_chr3_61556571_62302609	0/0	t0017	5020	1	0	1	0	0	0	copy fasta	PTPRG	chr3	61556571	62302609
PTPRH_chr19_55176247_55214501	1/1	t0001	576	220	66	41	70	13	28	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	t0002	576	90	11	24	49	0	6	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	t0003	576	59	15	8	21	1	14	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	t0004	576	4	3	1	0	0	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	t0005	576	2	2	0	0	0	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	t0006	576	1	1	0	0	0	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	t0007	576	1	0	0	1	0	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	t0008	576	1	0	0	1	0	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRJ_chr11_47975559_48175839	0/0	t0001	3830	18	4	4	9	0	1	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	t0002	3829	14	1	1	11	0	1	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	t0003	3835	11	3	2	5	1	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	t0004	3825	9	3	1	3	0	2	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	t0005	3829	8	6	0	0	0	2	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	t0006	3828	8	2	3	1	1	1	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	t0007	3827	8	3	3	1	1	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	t0008	3833	6	3	0	1	0	2	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	t0009	3837	6	0	0	6	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	t0010	3832	6	1	2	2	1	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	t0011	3833	6	3	0	0	1	2	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	t0012	3823	5	5	0	0	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	t0013	3825	5	3	1	1	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	t0014	3833	5	3	1	1	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	t0015	3823	5	2	0	3	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	t0016	3831	4	2	1	0	0	1	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	t0017	3831	4	0	2	1	0	1	copy fasta	PTPRJ	chr11	47975559	48175839