JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PTPRJ_chr11_47975559_48175839	0/0	t0018	3841	4	0	2	2	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	t0019	3831	4	2	0	0	0	2	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	t0020	3809	3	2	1	0	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	t0021	3825	3	3	0	0	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	t0022	3827	3	2	1	0	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	t0023	3841	3	2	0	1	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	t0024	3843	3	0	0	3	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	t0025	3829	3	0	0	3	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	t0026	3835	2	0	2	0	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	t0027	3831	2	2	0	0	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	t0028	3829	2	2	0	0	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	t0029	3831	2	2	0	0	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	t0030	3831	2	0	0	0	2	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	t0031	3832	2	0	0	1	0	1	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	t0032	3835	2	0	2	0	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/1	t0033	3839	2	1	0	0	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	t0034	3839	2	1	1	0	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	t0035	3824	2	2	0	0	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	t0036	3833	2	2	0	0	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	t0037	3822	2	2	0	0	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	t0038	3830	2	2	0	0	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	t0039	3833	2	2	0	0	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	t0040	3833	1	1	0	0	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	t0041	3833	1	1	0	0	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	t0042	3839	1	1	0	0	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	t0043	3832	1	1	0	0	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	t0044	3839	1	0	0	1	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	t0045	3823	1	1	0	0	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	t0046	3819	1	0	0	0	1	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	t0047	3823	1	1	0	0	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	t0048	3827	1	1	0	0	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	t0049	3831	1	1	0	0	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	t0050	3833	1	0	0	0	1	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	t0051	3836	1	0	0	0	0	1	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	t0052	3836	1	0	1	0	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	t0053	3838	1	1	0	0	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	t0054	3839	1	1	0	0	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	t0055	3843	1	1	0	0	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	t0056	3847	1	0	0	1	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	t0057	3847	1	0	1	0	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	t0058	3851	1	0	1	0	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	t0059	3824	1	0	1	0	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	t0060	3814	1	0	0	0	1	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	t0061	3812	1	1	0	0	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	t0062	3807	1	0	0	0	0	1	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	t0063	3826	1	0	1	0	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	t0064	3833	1	0	0	1	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	t0065	3833	1	0	1	0	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	t0066	3835	1	0	0	1	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	t0067	3832	1	0	0	1	0	0	copy fasta	PTPRJ	chr11	47975559	48175839