Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ATPAF1_chr1_46627737_46673364	0/0	t0013	3082	2	0	0	1	1	0	copy fasta	ATPAF1	chr1	46627737	46673364
ATPAF1_chr1_46627737_46673364	0/0	t0014	3082	2	2	0	0	0	0	copy fasta	ATPAF1	chr1	46627737	46673364
ATPAF1_chr1_46627737_46673364	0/0	t0015	3082	2	2	0	0	0	0	copy fasta	ATPAF1	chr1	46627737	46673364
ATPAF1_chr1_46627737_46673364	0/0	t0016	3082	2	1	1	0	0	0	copy fasta	ATPAF1	chr1	46627737	46673364
ATPAF1_chr1_46627737_46673364	0/0	t0017	3082	1	1	0	0	0	0	copy fasta	ATPAF1	chr1	46627737	46673364
ATPAF1_chr1_46627737_46673364	0/0	t0018	3083	1	0	0	1	0	0	copy fasta	ATPAF1	chr1	46627737	46673364
ATPAF1_chr1_46627737_46673364	0/0	t0019	3082	1	0	0	1	0	0	copy fasta	ATPAF1	chr1	46627737	46673364
ATPAF1_chr1_46627737_46673364	0/0	t0020	3083	1	1	0	0	0	0	copy fasta	ATPAF1	chr1	46627737	46673364
ATPAF1_chr1_46627737_46673364	0/0	t0021	3082	1	0	0	1	0	0	copy fasta	ATPAF1	chr1	46627737	46673364
ATPAF1_chr1_46627737_46673364	0/0	t0022	3082	1	0	1	0	0	0	copy fasta	ATPAF1	chr1	46627737	46673364
ATPAF1_chr1_46627737_46673364	0/0	t0023	3082	1	0	0	0	0	1	copy fasta	ATPAF1	chr1	46627737	46673364
ATPAF1_chr1_46627737_46673364	0/0	t0024	3082	1	0	0	0	0	1	copy fasta	ATPAF1	chr1	46627737	46673364
ATPAF1_chr1_46627737_46673364	0/0	t0025	3083	1	0	1	0	0	0	copy fasta	ATPAF1	chr1	46627737	46673364
ATPAF1_chr1_46627737_46673364	0/0	t0026	3082	1	1	0	0	0	0	copy fasta	ATPAF1	chr1	46627737	46673364
ATPAF1_chr1_46627737_46673364	0/0	t0027	3083	1	0	0	0	1	0	copy fasta	ATPAF1	chr1	46627737	46673364
ATPAF1_chr1_46627737_46673364	0/0	t0028	3083	1	0	0	1	0	0	copy fasta	ATPAF1	chr1	46627737	46673364
ATPAF1_chr1_46627737_46673364	0/0	t0029	3082	1	0	1	0	0	0	copy fasta	ATPAF1	chr1	46627737	46673364
ATPAF1_chr1_46627737_46673364	0/0	t0030	3082	1	1	0	0	0	0	copy fasta	ATPAF1	chr1	46627737	46673364
ATPAF2_chr17_18013021_18044168	1/1	t0001	684	275	68	66	95	12	32	copy fasta	ATPAF2	chr17	18013021	18044168
ATPAF2_chr17_18013021_18044168	0/0	t0002	684	22	10	4	8	0	0	copy fasta	ATPAF2	chr17	18013021	18044168
ATPAF2_chr17_18013021_18044168	0/0	t0003	684	12	0	0	12	0	0	copy fasta	ATPAF2	chr17	18013021	18044168
ATPAF2_chr17_18013021_18044168	0/0	t0004	684	9	0	0	9	0	0	copy fasta	ATPAF2	chr17	18013021	18044168
ATPAF2_chr17_18013021_18044168	0/0	t0005	684	5	5	0	0	0	0	copy fasta	ATPAF2	chr17	18013021	18044168
ATPAF2_chr17_18013021_18044168	0/0	t0006	684	1	0	0	1	0	0	copy fasta	ATPAF2	chr17	18013021	18044168
ATPAF2_chr17_18013021_18044168	0/0	t0007	684	1	1	0	0	0	0	copy fasta	ATPAF2	chr17	18013021	18044168
ATPAF2_chr17_18013021_18044168	0/0	t0008	684	1	0	0	1	0	0	copy fasta	ATPAF2	chr17	18013021	18044168
ATPAF2_chr17_18013021_18044168	0/0	t0009	684	1	0	1	0	0	0	copy fasta	ATPAF2	chr17	18013021	18044168
ATPAF2_chr17_18013021_18044168	0/0	t0010	684	1	0	1	0	0	0	copy fasta	ATPAF2	chr17	18013021	18044168
ATPSCKMT_chr5_10220507_10254888	0/0	t0001	1950	115	7	13	75	6	14	copy fasta	ATPSCKMT	chr5	10220507	10254888
ATPSCKMT_chr5_10220507_10254888	0/1	t0002	1950	93	49	23	12	3	5	copy fasta	ATPSCKMT	chr5	10220507	10254888
ATPSCKMT_chr5_10220507_10254888	0/0	t0003	1950	52	1	12	17	6	16	copy fasta	ATPSCKMT	chr5	10220507	10254888
ATPSCKMT_chr5_10220507_10254888	0/0	t0004	1950	31	8	16	0	2	5	copy fasta	ATPSCKMT	chr5	10220507	10254888
ATPSCKMT_chr5_10220507_10254888	1/0	t0005	1950	19	0	0	15	0	3	copy fasta	ATPSCKMT	chr5	10220507	10254888
ATPSCKMT_chr5_10220507_10254888	0/0	t0006	1950	13	10	1	2	0	0	copy fasta	ATPSCKMT	chr5	10220507	10254888
ATPSCKMT_chr5_10220507_10254888	0/0	t0007	1950	10	9	1	0	0	0	copy fasta	ATPSCKMT	chr5	10220507	10254888
ATPSCKMT_chr5_10220507_10254888	0/0	t0008	1950	5	5	0	0	0	0	copy fasta	ATPSCKMT	chr5	10220507	10254888
ATPSCKMT_chr5_10220507_10254888	0/0	t0009	1950	3	0	0	3	0	0	copy fasta	ATPSCKMT	chr5	10220507	10254888
ATPSCKMT_chr5_10220507_10254888	0/0	t0010	1950	2	0	0	2	0	0	copy fasta	ATPSCKMT	chr5	10220507	10254888
ATPSCKMT_chr5_10220507_10254888	0/0	t0011	1950	2	2	0	0	0	0	copy fasta	ATPSCKMT	chr5	10220507	10254888
ATPSCKMT_chr5_10220507_10254888	0/0	t0012	1950	2	2	0	0	0	0	copy fasta	ATPSCKMT	chr5	10220507	10254888
ATPSCKMT_chr5_10220507_10254888	0/0	t0013	1950	1	1	0	0	0	0	copy fasta	ATPSCKMT	chr5	10220507	10254888
ATPSCKMT_chr5_10220507_10254888	0/0	t0014	1950	1	1	0	0	0	0	copy fasta	ATPSCKMT	chr5	10220507	10254888
ATPSCKMT_chr5_10220507_10254888	0/0	t0015	1950	1	1	0	0	0	0	copy fasta	ATPSCKMT	chr5	10220507	10254888
ATPSCKMT_chr5_10220507_10254888	0/0	t0016	1950	1	0	0	1	0	0	copy fasta	ATPSCKMT	chr5	10220507	10254888
ATPSCKMT_chr5_10220507_10254888	0/0	t0017	1950	1	0	1	0	0	0	copy fasta	ATPSCKMT	chr5	10220507	10254888
ATPSCKMT_chr5_10220507_10254888	0/0	t0018	1950	1	1	0	0	0	0	copy fasta	ATPSCKMT	chr5	10220507	10254888
ATPSCKMT_chr5_10220507_10254888	0/0	t0019	1950	1	0	0	0	1	0	copy fasta	ATPSCKMT	chr5	10220507	10254888
ATPSCKMT_chr5_10220507_10254888	0/0	t0020	1950	1	0	0	0	0	1	copy fasta	ATPSCKMT	chr5	10220507	10254888
ATPSCKMT_chr5_10220507_10254888	0/0	t0021	1950	1	0	0	1	0	0	copy fasta	ATPSCKMT	chr5	10220507	10254888
ATPSCKMT_chr5_10220507_10254888	0/0	t0022	1950	1	0	1	0	0	0	copy fasta	ATPSCKMT	chr5	10220507	10254888