JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PTPRJ_chr11_47975559_48175839	0/0	t0068	3830	1	0	0	1	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	t0069	3826	1	0	0	1	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	t0070	3823	1	1	0	0	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	t0071	3831	1	1	0	0	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	1/0	t0072	3832	1	0	0	0	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	t0073	3845	1	1	0	0	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRK_chr6_127963785_128525599	0/1	t0001	1684	39	24	5	4	2	3	copy fasta	PTPRK	chr6	127963785	128525599
PTPRK_chr6_127963785_128525599	0/0	t0002	1684	6	3	3	0	0	0	copy fasta	PTPRK	chr6	127963785	128525599
PTPRK_chr6_127963785_128525599	0/0	t0003	1684	2	2	0	0	0	0	copy fasta	PTPRK	chr6	127963785	128525599
PTPRK_chr6_127963785_128525599	0/0	t0004	1684	2	2	0	0	0	0	copy fasta	PTPRK	chr6	127963785	128525599
PTPRK_chr6_127963785_128525599	0/0	t0005	1684	1	1	0	0	0	0	copy fasta	PTPRK	chr6	127963785	128525599
PTPRK_chr6_127963785_128525599	0/0	t0006	1684	1	1	0	0	0	0	copy fasta	PTPRK	chr6	127963785	128525599
PTPRK_chr6_127963785_128525599	0/0	t0007	1684	1	1	0	0	0	0	copy fasta	PTPRK	chr6	127963785	128525599
PTPRK_chr6_127963785_128525599	0/0	t0008	1684	1	0	0	0	0	1	copy fasta	PTPRK	chr6	127963785	128525599
PTPRM_chr18_7562316_8411856	0/0	t0001	1198	41	30	4	6	1	0	copy fasta	PTPRM	chr18	7562316	8411856
PTPRM_chr18_7562316_8411856	0/0	t0002	1198	25	19	3	2	1	0	copy fasta	PTPRM	chr18	7562316	8411856
PTPRM_chr18_7562316_8411856	0/0	t0003	1198	8	8	0	0	0	0	copy fasta	PTPRM	chr18	7562316	8411856
PTPRM_chr18_7562316_8411856	0/0	t0004	1216	3	2	1	0	0	0	copy fasta	PTPRM	chr18	7562316	8411856
PTPRM_chr18_7562316_8411856	0/0	t0005	1198	2	2	0	0	0	0	copy fasta	PTPRM	chr18	7562316	8411856
PTPRM_chr18_7562316_8411856	0/0	t0006	1198	1	1	0	0	0	0	copy fasta	PTPRM	chr18	7562316	8411856
PTPRN_chr2_219284623_219314401	1/1	t0001	673	295	50	64	147	9	23	copy fasta	PTPRN	chr2	219284623	219314401
PTPRN_chr2_219284623_219314401	0/0	t0002	673	97	39	7	35	2	14	copy fasta	PTPRN	chr2	219284623	219314401
PTPRN_chr2_219284623_219314401	0/0	t0003	675	9	1	4	0	0	4	copy fasta	PTPRN	chr2	219284623	219314401
PTPRN_chr2_219284623_219314401	0/0	t0004	673	7	1	2	0	3	1	copy fasta	PTPRN	chr2	219284623	219314401
PTPRN_chr2_219284623_219314401	0/0	t0005	673	2	0	2	0	0	0	copy fasta	PTPRN	chr2	219284623	219314401
PTPRN_chr2_219284623_219314401	0/0	t0006	673	2	0	1	0	0	1	copy fasta	PTPRN	chr2	219284623	219314401
PTPRN_chr2_219284623_219314401	0/0	t0007	673	1	0	0	0	0	1	copy fasta	PTPRN	chr2	219284623	219314401
PTPRN_chr2_219284623_219314401	0/0	t0008	673	1	1	0	0	0	0	copy fasta	PTPRN	chr2	219284623	219314401
PTPRO_chr12_15317508_15603331	0/1	t0001	2478	92	12	16	44	6	13	copy fasta	PTPRO	chr12	15317508	15603331
PTPRO_chr12_15317508_15603331	0/0	t0002	2478	15	14	1	0	0	0	copy fasta	PTPRO	chr12	15317508	15603331
PTPRO_chr12_15317508_15603331	1/0	t0003	2478	14	11	2	0	0	0	copy fasta	PTPRO	chr12	15317508	15603331
PTPRO_chr12_15317508_15603331	0/0	t0004	2478	10	6	0	4	0	0	copy fasta	PTPRO	chr12	15317508	15603331
PTPRO_chr12_15317508_15603331	0/0	t0005	2478	7	5	2	0	0	0	copy fasta	PTPRO	chr12	15317508	15603331
PTPRO_chr12_15317508_15603331	0/0	t0006	2481	6	4	2	0	0	0	copy fasta	PTPRO	chr12	15317508	15603331
PTPRO_chr12_15317508_15603331	0/0	t0007	2478	5	5	0	0	0	0	copy fasta	PTPRO	chr12	15317508	15603331
PTPRO_chr12_15317508_15603331	0/0	t0008	2481	3	3	0	0	0	0	copy fasta	PTPRO	chr12	15317508	15603331
PTPRO_chr12_15317508_15603331	0/0	t0009	2478	3	0	0	3	0	0	copy fasta	PTPRO	chr12	15317508	15603331
PTPRO_chr12_15317508_15603331	0/0	t0010	2478	2	0	0	0	0	2	copy fasta	PTPRO	chr12	15317508	15603331
PTPRO_chr12_15317508_15603331	0/0	t0011	2478	1	1	0	0	0	0	copy fasta	PTPRO	chr12	15317508	15603331
PTPRO_chr12_15317508_15603331	0/0	t0012	2478	1	1	0	0	0	0	copy fasta	PTPRO	chr12	15317508	15603331
PTPRO_chr12_15317508_15603331	0/0	t0013	2478	1	0	0	0	0	1	copy fasta	PTPRO	chr12	15317508	15603331
PTPRO_chr12_15317508_15603331	0/0	t0014	2478	1	0	1	0	0	0	copy fasta	PTPRO	chr12	15317508	15603331
PTPRO_chr12_15317508_15603331	0/0	t0015	2478	1	1	0	0	0	0	copy fasta	PTPRO	chr12	15317508	15603331
PTPRO_chr12_15317508_15603331	0/0	t0016	2478	1	1	0	0	0	0	copy fasta	PTPRO	chr12	15317508	15603331
PTPRO_chr12_15317508_15603331	0/0	t0017	2478	1	0	0	1	0	0	copy fasta	PTPRO	chr12	15317508	15603331
PTPRQ_chr12_80439235_80685273	1/0	t0001	1362	66	10	21	26	2	6	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/1	t0002	1362	64	27	15	13	4	4	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	t0003	1362	25	19	4	1	0	1	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	t0004	1362	15	13	2	0	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	t0005	1362	3	3	0	0	0	0	copy fasta	PTPRQ	chr12	80439235	80685273