JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PTPRQ_chr12_80439235_80685273	0/0	t0006	1362	2	2	0	0	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	t0007	1362	2	0	0	0	0	2	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	t0008	1362	1	0	0	0	0	1	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRR_chr12_70633079_70925738	1/1	t0001	1454	192	78	29	62	5	16	copy fasta	PTPRR	chr12	70633079	70925738
PTPRR_chr12_70633079_70925738	0/0	t0002	1454	7	4	1	0	1	1	copy fasta	PTPRR	chr12	70633079	70925738
PTPRR_chr12_70633079_70925738	0/0	t0003	1454	3	3	0	0	0	0	copy fasta	PTPRR	chr12	70633079	70925738
PTPRR_chr12_70633079_70925738	0/0	t0004	1454	1	1	0	0	0	0	copy fasta	PTPRR	chr12	70633079	70925738
PTPRR_chr12_70633079_70925738	0/0	t0005	1454	1	0	0	0	0	1	copy fasta	PTPRR	chr12	70633079	70925738
PTPRS_chr19_5200508_5345812	0/0	t0001	1506	71	15	23	20	2	11	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	1/1	t0002	1510	41	1	15	16	3	4	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	t0003	1505	22	3	9	4	1	5	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	t0004	1516	16	3	5	6	0	2	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	t0005	1506	11	5	2	0	2	2	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	t0006	1510	10	0	4	1	2	3	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	t0007	1510	9	9	0	0	0	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	t0008	1505	9	1	2	3	0	3	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	t0009	1504	7	0	3	1	0	3	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	t0010	1506	7	7	0	0	0	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	t0011	1511	7	7	0	0	0	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	t0012	1510	6	6	0	0	0	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	t0013	1505	5	1	1	0	0	3	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	t0014	1506	4	3	1	0	0	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	t0015	1505	4	0	4	0	0	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	t0016	1514	4	4	0	0	0	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	t0017	1506	3	0	0	2	0	1	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	t0018	1507	3	0	1	1	1	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	t0019	1514	3	3	0	0	0	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	t0020	1514	2	2	0	0	0	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	t0021	1514	2	2	0	0	0	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	t0022	1505	2	1	1	0	0	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	t0023	1506	2	0	1	1	0	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	t0024	1506	2	0	0	0	2	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	t0025	1510	2	0	0	2	0	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	t0026	1506	1	1	0	0	0	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	t0027	1513	1	1	0	0	0	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	t0028	1506	1	1	0	0	0	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	t0029	1508	1	1	0	0	0	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	t0030	1509	1	1	0	0	0	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	t0031	1505	1	1	0	0	0	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	t0032	1506	1	0	0	1	0	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	t0033	1506	1	0	1	0	0	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	t0034	1507	1	1	0	0	0	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	t0035	1507	1	1	0	0	0	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	t0036	1512	1	1	0	0	0	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	t0037	1509	1	1	0	0	0	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	t0038	1509	1	0	1	0	0	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	t0039	1509	1	0	0	0	1	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	t0040	1510	1	0	1	0	0	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	t0041	1506	1	1	0	0	0	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	t0042	1515	1	1	0	0	0	0	copy fasta	PTPRS	chr19	5200508	5345812