JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PTPRS_chr19_5200508_5345812	0/0	t0043	1513	1	0	0	0	0	1	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	t0044	1514	1	1	0	0	0	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	t0045	1509	1	0	0	1	0	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	t0046	1511	1	0	1	0	0	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	t0047	1510	1	0	0	1	0	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRT_chr20_42067756_43194906	0/0	t0001	8296	9	8	1	0	0	0	copy fasta	PTPRT	chr20	42067756	43194906
PTPRT_chr20_42067756_43194906	0/0	t0002	8301	9	3	3	1	1	1	copy fasta	PTPRT	chr20	42067756	43194906
PTPRT_chr20_42067756_43194906	0/0	t0003	8297	4	2	1	1	0	0	copy fasta	PTPRT	chr20	42067756	43194906
PTPRT_chr20_42067756_43194906	0/0	t0004	8308	3	1	1	0	0	1	copy fasta	PTPRT	chr20	42067756	43194906
PTPRT_chr20_42067756_43194906	0/0	t0005	8298	3	3	0	0	0	0	copy fasta	PTPRT	chr20	42067756	43194906
PTPRT_chr20_42067756_43194906	0/0	t0006	8307	3	3	0	0	0	0	copy fasta	PTPRT	chr20	42067756	43194906
PTPRT_chr20_42067756_43194906	0/0	t0007	8305	3	3	0	0	0	0	copy fasta	PTPRT	chr20	42067756	43194906
PTPRT_chr20_42067756_43194906	0/0	t0008	8296	2	2	0	0	0	0	copy fasta	PTPRT	chr20	42067756	43194906
PTPRT_chr20_42067756_43194906	0/0	t0009	8298	2	1	1	0	0	0	copy fasta	PTPRT	chr20	42067756	43194906
PTPRT_chr20_42067756_43194906	0/0	t0010	8302	2	0	1	0	1	0	copy fasta	PTPRT	chr20	42067756	43194906
PTPRT_chr20_42067756_43194906	0/0	t0011	8297	2	2	0	0	0	0	copy fasta	PTPRT	chr20	42067756	43194906
PTPRT_chr20_42067756_43194906	0/0	t0012	8304	2	0	0	0	0	2	copy fasta	PTPRT	chr20	42067756	43194906
PTPRT_chr20_42067756_43194906	0/0	t0013	8304	1	1	0	0	0	0	copy fasta	PTPRT	chr20	42067756	43194906
PTPRT_chr20_42067756_43194906	0/0	t0014	8299	1	1	0	0	0	0	copy fasta	PTPRT	chr20	42067756	43194906
PTPRT_chr20_42067756_43194906	0/0	t0015	8299	1	0	1	0	0	0	copy fasta	PTPRT	chr20	42067756	43194906
PTPRT_chr20_42067756_43194906	0/0	t0016	8296	1	0	1	0	0	0	copy fasta	PTPRT	chr20	42067756	43194906
PTPRT_chr20_42067756_43194906	0/0	t0017	8297	1	0	1	0	0	0	copy fasta	PTPRT	chr20	42067756	43194906
PTPRT_chr20_42067756_43194906	0/0	t0018	8298	1	1	0	0	0	0	copy fasta	PTPRT	chr20	42067756	43194906
PTPRT_chr20_42067756_43194906	0/0	t0019	8302	1	0	0	1	0	0	copy fasta	PTPRT	chr20	42067756	43194906
PTPRT_chr20_42067756_43194906	0/0	t0020	8307	1	1	0	0	0	0	copy fasta	PTPRT	chr20	42067756	43194906
PTPRT_chr20_42067756_43194906	0/0	t0021	8303	1	1	0	0	0	0	copy fasta	PTPRT	chr20	42067756	43194906
PTPRT_chr20_42067756_43194906	0/0	t0022	8302	1	0	1	0	0	0	copy fasta	PTPRT	chr20	42067756	43194906
PTPRT_chr20_42067756_43194906	0/0	t0023	8301	1	1	0	0	0	0	copy fasta	PTPRT	chr20	42067756	43194906
PTPRT_chr20_42067756_43194906	0/0	t0024	8301	1	0	1	0	0	0	copy fasta	PTPRT	chr20	42067756	43194906
PTPRT_chr20_42067756_43194906	0/0	t0025	8304	1	0	1	0	0	0	copy fasta	PTPRT	chr20	42067756	43194906
PTPRT_chr20_42067756_43194906	0/0	t0026	8301	1	0	0	1	0	0	copy fasta	PTPRT	chr20	42067756	43194906
PTPRT_chr20_42067756_43194906	0/0	t0027	8305	1	1	0	0	0	0	copy fasta	PTPRT	chr20	42067756	43194906
PTPRT_chr20_42067756_43194906	0/0	t0028	8306	1	1	0	0	0	0	copy fasta	PTPRT	chr20	42067756	43194906
PTPRT_chr20_42067756_43194906	0/0	t0029	8304	1	1	0	0	0	0	copy fasta	PTPRT	chr20	42067756	43194906
PTPRT_chr20_42067756_43194906	0/0	t0030	8304	1	1	0	0	0	0	copy fasta	PTPRT	chr20	42067756	43194906
PTPRU_chr1_29231522_29331800	1/0	t0001	1263	213	71	35	88	2	16	copy fasta	PTPRU	chr1	29231522	29331800
PTPRU_chr1_29231522_29331800	0/0	t0002	1263	41	3	15	9	5	9	copy fasta	PTPRU	chr1	29231522	29331800
PTPRU_chr1_29231522_29331800	0/0	t0003	1263	15	1	0	0	3	11	copy fasta	PTPRU	chr1	29231522	29331800
PTPRU_chr1_29231522_29331800	0/0	t0004	1263	10	7	3	0	0	0	copy fasta	PTPRU	chr1	29231522	29331800
PTPRU_chr1_29231522_29331800	0/0	t0005	1263	5	0	1	1	1	2	copy fasta	PTPRU	chr1	29231522	29331800
PTPRU_chr1_29231522_29331800	0/0	t0006	1263	4	3	1	0	0	0	copy fasta	PTPRU	chr1	29231522	29331800
PTPRU_chr1_29231522_29331800	0/0	t0007	1263	2	0	0	2	0	0	copy fasta	PTPRU	chr1	29231522	29331800
PTPRU_chr1_29231522_29331800	0/0	t0008	1275	2	2	0	0	0	0	copy fasta	PTPRU	chr1	29231522	29331800
PTPRU_chr1_29231522_29331800	0/0	t0009	1263	1	0	1	0	0	0	copy fasta	PTPRU	chr1	29231522	29331800
PTPRU_chr1_29231522_29331800	0/1	t0010	1263	1	0	0	0	0	0	copy fasta	PTPRU	chr1	29231522	29331800
PTPRU_chr1_29231522_29331800	0/0	t0011	1263	1	1	0	0	0	0	copy fasta	PTPRU	chr1	29231522	29331800
PTPRU_chr1_29231522_29331800	0/0	t0012	1263	1	0	0	0	1	0	copy fasta	PTPRU	chr1	29231522	29331800
PTPRZ1_chr7_121868161_122067036	1/1	t0001	1156	106	17	25	48	1	13	copy fasta	PTPRZ1	chr7	121868161	122067036
PTPRZ1_chr7_121868161_122067036	0/0	t0002	1158	96	19	24	40	1	12	copy fasta	PTPRZ1	chr7	121868161	122067036
PTPRZ1_chr7_121868161_122067036	0/0	t0003	1154	66	4	10	49	0	3	copy fasta	PTPRZ1	chr7	121868161	122067036