JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PTPRZ1_chr7_121868161_122067036	0/0	t0004	1154	18	17	1	0	0	0	copy fasta	PTPRZ1	chr7	121868161	122067036
PTPRZ1_chr7_121868161_122067036	0/0	t0005	1154	13	12	1	0	0	0	copy fasta	PTPRZ1	chr7	121868161	122067036
PTPRZ1_chr7_121868161_122067036	0/0	t0006	1154	9	6	0	1	0	2	copy fasta	PTPRZ1	chr7	121868161	122067036
PTPRZ1_chr7_121868161_122067036	0/0	t0007	1156	1	0	1	0	0	0	copy fasta	PTPRZ1	chr7	121868161	122067036
PTPRZ1_chr7_121868161_122067036	0/0	t0008	1156	1	0	0	1	0	0	copy fasta	PTPRZ1	chr7	121868161	122067036
PTPRZ1_chr7_121868161_122067036	0/0	t0009	1154	1	1	0	0	0	0	copy fasta	PTPRZ1	chr7	121868161	122067036
PTPRZ1_chr7_121868161_122067036	0/0	t0010	1156	1	0	0	1	0	0	copy fasta	PTPRZ1	chr7	121868161	122067036
PTRH1_chr9_127708807_127720663	1/1	t0001	318	344	89	74	125	12	42	copy fasta	PTRH1	chr9	127708807	127720663
PTRH1_chr9_127708807_127720663	0/0	t0002	318	2	0	0	2	0	0	copy fasta	PTRH1	chr9	127708807	127720663
PTRH1_chr9_127708807_127720663	0/0	t0003	318	1	1	0	0	0	0	copy fasta	PTRH1	chr9	127708807	127720663
PTRH1_chr9_127708807_127720663	0/0	t0004	318	1	0	0	1	0	0	copy fasta	PTRH1	chr9	127708807	127720663
PTRH2_chr17_59692308_59712430	1/1	t0001	192	367	98	62	150	8	47	copy fasta	PTRH2	chr17	59692308	59712430
PTRH2_chr17_59692308_59712430	0/0	t0002	192	2	0	0	0	2	0	copy fasta	PTRH2	chr17	59692308	59712430
PTRH2_chr17_59692308_59712430	0/0	t0003	192	1	0	0	0	0	1	copy fasta	PTRH2	chr17	59692308	59712430
PTRHD1_chr2_24784728_24798391	1/0	t0001	698	240	70	37	99	12	21	copy fasta	PTRHD1	chr2	24784728	24798391
PTRHD1_chr2_24784728_24798391	0/1	t0002	698	159	11	46	82	4	15	copy fasta	PTRHD1	chr2	24784728	24798391
PTRHD1_chr2_24784728_24798391	0/0	t0003	700	3	0	0	3	0	0	copy fasta	PTRHD1	chr2	24784728	24798391
PTRHD1_chr2_24784728_24798391	0/0	t0004	698	2	2	0	0	0	0	copy fasta	PTRHD1	chr2	24784728	24798391
PTRHD1_chr2_24784728_24798391	0/0	t0005	698	1	0	0	1	0	0	copy fasta	PTRHD1	chr2	24784728	24798391
PTRHD1_chr2_24784728_24798391	0/0	t0006	698	1	0	1	0	0	0	copy fasta	PTRHD1	chr2	24784728	24798391
PTRHD1_chr2_24784728_24798391	0/0	t0007	698	1	0	0	1	0	0	copy fasta	PTRHD1	chr2	24784728	24798391
PTRHD1_chr2_24784728_24798391	0/0	t0008	698	1	1	0	0	0	0	copy fasta	PTRHD1	chr2	24784728	24798391
PTS_chr11_112221428_112238973	1/1	t0001	435	393	93	74	164	14	46	copy fasta	PTS	chr11	112221428	112238973
PTS_chr11_112221428_112238973	0/0	t0002	431	8	0	0	8	0	0	copy fasta	PTS	chr11	112221428	112238973
PTS_chr11_112221428_112238973	0/0	t0003	435	3	1	2	0	0	0	copy fasta	PTS	chr11	112221428	112238973
PTTG1IP2_chr7_90464639_90518397	0/1	t0001	319	374	83	70	163	12	45	copy fasta	PTTG1IP2	chr7	90464639	90518397
PTTG1IP2_chr7_90464639_90518397	1/0	t0002	319	9	2	4	1	0	1	copy fasta	PTTG1IP2	chr7	90464639	90518397
PTTG1IP2_chr7_90464639_90518397	0/0	t0003	319	1	1	0	0	0	0	copy fasta	PTTG1IP2	chr7	90464639	90518397
PTTG1IP_chr21_44844598_44878690	0/0	t0001	2058	109	1	15	72	6	15	copy fasta	PTTG1IP	chr21	44844598	44878690
PTTG1IP_chr21_44844598_44878690	1/0	t0002	2058	96	22	20	40	3	10	copy fasta	PTTG1IP	chr21	44844598	44878690
PTTG1IP_chr21_44844598_44878690	0/0	t0003	2058	93	0	13	72	1	7	copy fasta	PTTG1IP	chr21	44844598	44878690
PTTG1IP_chr21_44844598_44878690	0/0	t0004	2058	29	8	12	0	3	6	copy fasta	PTTG1IP	chr21	44844598	44878690
PTTG1IP_chr21_44844598_44878690	0/0	t0005	2058	27	24	3	0	0	0	copy fasta	PTTG1IP	chr21	44844598	44878690
PTTG1IP_chr21_44844598_44878690	0/1	t0006	2058	26	4	4	11	4	2	copy fasta	PTTG1IP	chr21	44844598	44878690
PTTG1IP_chr21_44844598_44878690	0/0	t0007	2058	13	13	0	0	0	0	copy fasta	PTTG1IP	chr21	44844598	44878690
PTTG1IP_chr21_44844598_44878690	0/0	t0008	2058	8	7	1	0	0	0	copy fasta	PTTG1IP	chr21	44844598	44878690
PTTG1IP_chr21_44844598_44878690	0/0	t0009	2058	5	5	0	0	0	0	copy fasta	PTTG1IP	chr21	44844598	44878690
PTTG1IP_chr21_44844598_44878690	0/0	t0010	2058	4	0	4	0	0	0	copy fasta	PTTG1IP	chr21	44844598	44878690
PTTG1IP_chr21_44844598_44878690	0/0	t0011	2058	3	0	0	2	0	1	copy fasta	PTTG1IP	chr21	44844598	44878690
PTTG1IP_chr21_44844598_44878690	0/0	t0012	2058	3	0	0	0	0	3	copy fasta	PTTG1IP	chr21	44844598	44878690
PTTG1IP_chr21_44844598_44878690	0/0	t0013	2058	2	0	0	0	0	2	copy fasta	PTTG1IP	chr21	44844598	44878690
PTTG1IP_chr21_44844598_44878690	0/0	t0014	2058	2	2	0	0	0	0	copy fasta	PTTG1IP	chr21	44844598	44878690
PTTG1IP_chr21_44844598_44878690	0/0	t0015	2058	2	2	0	0	0	0	copy fasta	PTTG1IP	chr21	44844598	44878690
PTTG1IP_chr21_44844598_44878690	0/0	t0016	2058	2	0	2	0	0	0	copy fasta	PTTG1IP	chr21	44844598	44878690
PTTG1IP_chr21_44844598_44878690	0/0	t0017	2058	2	0	2	0	0	0	copy fasta	PTTG1IP	chr21	44844598	44878690
PTTG1IP_chr21_44844598_44878690	0/0	t0018	2058	2	2	0	0	0	0	copy fasta	PTTG1IP	chr21	44844598	44878690
PTTG1IP_chr21_44844598_44878690	0/0	t0019	2058	2	0	0	0	0	2	copy fasta	PTTG1IP	chr21	44844598	44878690
PTTG1IP_chr21_44844598_44878690	0/0	t0020	2058	1	1	0	0	0	0	copy fasta	PTTG1IP	chr21	44844598	44878690
PTTG1IP_chr21_44844598_44878690	0/0	t0021	2058	1	1	0	0	0	0	copy fasta	PTTG1IP	chr21	44844598	44878690
PTTG1IP_chr21_44844598_44878690	0/0	t0022	2058	1	1	0	0	0	0	copy fasta	PTTG1IP	chr21	44844598	44878690