JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PTTG1IP_chr21_44844598_44878690	0/0	t0023	2058	1	1	0	0	0	0	copy fasta	PTTG1IP	chr21	44844598	44878690
PTTG1IP_chr21_44844598_44878690	0/0	t0024	2058	1	0	1	0	0	0	copy fasta	PTTG1IP	chr21	44844598	44878690
PTTG1IP_chr21_44844598_44878690	0/0	t0025	2058	1	1	0	0	0	0	copy fasta	PTTG1IP	chr21	44844598	44878690
PTTG1IP_chr21_44844598_44878690	0/0	t0026	2058	1	1	0	0	0	0	copy fasta	PTTG1IP	chr21	44844598	44878690
PTTG1IP_chr21_44844598_44878690	0/0	t0027	2058	1	0	1	0	0	0	copy fasta	PTTG1IP	chr21	44844598	44878690
PTTG1IP_chr21_44844598_44878690	0/0	t0028	2058	1	0	1	0	0	0	copy fasta	PTTG1IP	chr21	44844598	44878690
PTTG1IP_chr21_44844598_44878690	0/0	t0029	2058	1	0	0	0	1	0	copy fasta	PTTG1IP	chr21	44844598	44878690
PTTG1IP_chr21_44844598_44878690	0/0	t0030	2058	1	0	1	0	0	0	copy fasta	PTTG1IP	chr21	44844598	44878690
PTTG1IP_chr21_44844598_44878690	0/0	t0031	2058	1	0	0	1	0	0	copy fasta	PTTG1IP	chr21	44844598	44878690
PTTG1IP_chr21_44844598_44878690	0/0	t0032	2058	1	1	0	0	0	0	copy fasta	PTTG1IP	chr21	44844598	44878690
PTTG1IP_chr21_44844598_44878690	0/0	t0033	2058	1	1	0	0	0	0	copy fasta	PTTG1IP	chr21	44844598	44878690
PTTG1_chr5_160416855_160433739	1/1	t0001	107	464	93	81	228	18	42	copy fasta	PTTG1	chr5	160416855	160433739
PTTG1_chr5_160416855_160433739	0/0	t0002	107	4	3	1	0	0	0	copy fasta	PTTG1	chr5	160416855	160433739
PTTG2_chr4_37955398_37966128	1/1	t0001	156	437	95	82	198	16	44	copy fasta	PTTG2	chr4	37955398	37966128
PTTG2_chr4_37955398_37966128	0/0	t0002	156	1	1	0	0	0	0	copy fasta	PTTG2	chr4	37955398	37966128
PTX3_chr3_157431850_157448633	0/0	t0001	740	299	54	55	146	12	32	copy fasta	PTX3	chr3	157431850	157448633
PTX3_chr3_157431850_157448633	1/1	t0002	739	95	20	24	31	6	12	copy fasta	PTX3	chr3	157431850	157448633
PTX3_chr3_157431850_157448633	0/0	t0003	739	41	2	4	31	0	4	copy fasta	PTX3	chr3	157431850	157448633
PTX3_chr3_157431850_157448633	0/0	t0004	740	12	12	0	0	0	0	copy fasta	PTX3	chr3	157431850	157448633
PTX3_chr3_157431850_157448633	0/0	t0005	740	8	0	0	8	0	0	copy fasta	PTX3	chr3	157431850	157448633
PTX3_chr3_157431850_157448633	0/0	t0006	740	7	1	0	6	0	0	copy fasta	PTX3	chr3	157431850	157448633
PTX3_chr3_157431850_157448633	0/0	t0007	739	2	0	2	0	0	0	copy fasta	PTX3	chr3	157431850	157448633
PTX3_chr3_157431850_157448633	0/0	t0008	740	2	2	0	0	0	0	copy fasta	PTX3	chr3	157431850	157448633
PTX3_chr3_157431850_157448633	0/0	t0009	740	2	2	0	0	0	0	copy fasta	PTX3	chr3	157431850	157448633
PTX3_chr3_157431850_157448633	0/0	t0010	740	2	2	0	0	0	0	copy fasta	PTX3	chr3	157431850	157448633
PTX3_chr3_157431850_157448633	0/0	t0011	739	1	0	1	0	0	0	copy fasta	PTX3	chr3	157431850	157448633
PTX3_chr3_157431850_157448633	0/0	t0012	739	1	1	0	0	0	0	copy fasta	PTX3	chr3	157431850	157448633
PTX4_chr16_1480886_1493944	1/1	t0001	89	425	80	76	203	14	50	copy fasta	PTX4	chr16	1480886	1493944
PTX4_chr16_1480886_1493944	0/0	t0002	89	16	14	2	0	0	0	copy fasta	PTX4	chr16	1480886	1493944
PTX4_chr16_1480886_1493944	0/0	t0003	89	1	0	0	1	0	0	copy fasta	PTX4	chr16	1480886	1493944
PUDP_chrX_7043920_7153153	0/0	t0001	1417	79	16	10	44	3	6	copy fasta	PUDP	chrX	7043920	7153153
PUDP_chrX_7043920_7153153	0/0	t0002	1413	71	4	11	45	2	9	copy fasta	PUDP	chrX	7043920	7153153
PUDP_chrX_7043920_7153153	1/1	t0003	1417	46	14	8	13	6	3	copy fasta	PUDP	chrX	7043920	7153153
PUDP_chrX_7043920_7153153	0/0	t0004	1417	32	0	9	20	0	3	copy fasta	PUDP	chrX	7043920	7153153
PUDP_chrX_7043920_7153153	0/0	t0005	1417	13	11	2	0	0	0	copy fasta	PUDP	chrX	7043920	7153153
PUDP_chrX_7043920_7153153	0/0	t0006	1417	11	5	2	0	1	3	copy fasta	PUDP	chrX	7043920	7153153
PUDP_chrX_7043920_7153153	0/0	t0007	1417	2	2	0	0	0	0	copy fasta	PUDP	chrX	7043920	7153153
PUDP_chrX_7043920_7153153	0/0	t0008	1411	1	0	0	1	0	0	copy fasta	PUDP	chrX	7043920	7153153
PUDP_chrX_7043920_7153153	0/0	t0009	1417	1	1	0	0	0	0	copy fasta	PUDP	chrX	7043920	7153153
PUDP_chrX_7043920_7153153	0/0	t0010	1417	1	0	0	1	0	0	copy fasta	PUDP	chrX	7043920	7153153
PUDP_chrX_7043920_7153153	0/0	t0011	1417	1	1	0	0	0	0	copy fasta	PUDP	chrX	7043920	7153153
PUDP_chrX_7043920_7153153	0/0	t0012	1417	1	0	0	0	1	0	copy fasta	PUDP	chrX	7043920	7153153
PUDP_chrX_7043920_7153153	0/0	t0013	1418	1	0	0	1	0	0	copy fasta	PUDP	chrX	7043920	7153153
PUF60_chr8_143811344_143834315	0/1	t0001	189	397	90	78	170	14	44	copy fasta	PUF60	chr8	143811344	143834315
PUM1_chr1_30926506_31070717	0/0	t0001	1817	66	34	14	3	4	11	copy fasta	PUM1	chr1	30926506	31070717
PUM1_chr1_30926506_31070717	0/1	t0002	1817	63	25	9	20	3	5	copy fasta	PUM1	chr1	30926506	31070717
PUM1_chr1_30926506_31070717	1/0	t0003	1819	61	10	16	24	3	7	copy fasta	PUM1	chr1	30926506	31070717
PUM1_chr1_30926506_31070717	0/0	t0004	1813	60	0	10	44	1	5	copy fasta	PUM1	chr1	30926506	31070717
PUM1_chr1_30926506_31070717	0/0	t0005	1815	30	0	1	23	0	6	copy fasta	PUM1	chr1	30926506	31070717
PUM1_chr1_30926506_31070717	0/0	t0006	1819	9	0	5	1	1	2	copy fasta	PUM1	chr1	30926506	31070717