JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PUM1_chr1_30926506_31070717	0/0	t0007	1817	7	0	2	5	0	0	copy fasta	PUM1	chr1	30926506	31070717
PUM1_chr1_30926506_31070717	0/0	t0008	1819	5	2	1	2	0	0	copy fasta	PUM1	chr1	30926506	31070717
PUM1_chr1_30926506_31070717	0/0	t0009	1821	5	0	1	1	2	1	copy fasta	PUM1	chr1	30926506	31070717
PUM1_chr1_30926506_31070717	0/0	t0010	1821	4	3	1	0	0	0	copy fasta	PUM1	chr1	30926506	31070717
PUM1_chr1_30926506_31070717	0/0	t0011	1817	3	0	0	3	0	0	copy fasta	PUM1	chr1	30926506	31070717
PUM1_chr1_30926506_31070717	0/0	t0012	1815	3	0	0	3	0	0	copy fasta	PUM1	chr1	30926506	31070717
PUM1_chr1_30926506_31070717	0/0	t0013	1819	2	1	1	0	0	0	copy fasta	PUM1	chr1	30926506	31070717
PUM1_chr1_30926506_31070717	0/0	t0014	1821	2	0	1	0	0	1	copy fasta	PUM1	chr1	30926506	31070717
PUM1_chr1_30926506_31070717	0/0	t0015	1823	2	1	0	1	0	0	copy fasta	PUM1	chr1	30926506	31070717
PUM1_chr1_30926506_31070717	0/0	t0016	1817	2	1	1	0	0	0	copy fasta	PUM1	chr1	30926506	31070717
PUM1_chr1_30926506_31070717	0/0	t0017	1819	2	1	0	1	0	0	copy fasta	PUM1	chr1	30926506	31070717
PUM1_chr1_30926506_31070717	0/0	t0018	1819	1	0	0	1	0	0	copy fasta	PUM1	chr1	30926506	31070717
PUM1_chr1_30926506_31070717	0/0	t0019	1823	1	0	0	1	0	0	copy fasta	PUM1	chr1	30926506	31070717
PUM1_chr1_30926506_31070717	0/0	t0020	1815	1	1	0	0	0	0	copy fasta	PUM1	chr1	30926506	31070717
PUM1_chr1_30926506_31070717	0/0	t0021	1817	1	1	0	0	0	0	copy fasta	PUM1	chr1	30926506	31070717
PUM1_chr1_30926506_31070717	0/0	t0022	1817	1	0	1	0	0	0	copy fasta	PUM1	chr1	30926506	31070717
PUM1_chr1_30926506_31070717	0/0	t0023	1815	1	0	0	1	0	0	copy fasta	PUM1	chr1	30926506	31070717
PUM1_chr1_30926506_31070717	0/0	t0024	1833	1	0	0	1	0	0	copy fasta	PUM1	chr1	30926506	31070717
PUM1_chr1_30926506_31070717	0/0	t0025	1819	1	0	0	1	0	0	copy fasta	PUM1	chr1	30926506	31070717
PUM2_chr2_20243737_20355844	1/0	t0001	3115	177	52	30	71	7	16	copy fasta	PUM2	chr2	20243737	20355844
PUM2_chr2_20243737_20355844	0/1	t0002	3115	90	14	20	42	3	10	copy fasta	PUM2	chr2	20243737	20355844
PUM2_chr2_20243737_20355844	0/0	t0003	3115	18	1	5	8	1	3	copy fasta	PUM2	chr2	20243737	20355844
PUM2_chr2_20243737_20355844	0/0	t0004	3115	11	0	2	9	0	0	copy fasta	PUM2	chr2	20243737	20355844
PUM2_chr2_20243737_20355844	0/0	t0005	3115	8	8	0	0	0	0	copy fasta	PUM2	chr2	20243737	20355844
PUM2_chr2_20243737_20355844	0/0	t0006	3116	7	0	1	2	0	4	copy fasta	PUM2	chr2	20243737	20355844
PUM2_chr2_20243737_20355844	0/0	t0007	3115	6	0	4	0	1	1	copy fasta	PUM2	chr2	20243737	20355844
PUM2_chr2_20243737_20355844	0/0	t0008	3115	5	5	0	0	0	0	copy fasta	PUM2	chr2	20243737	20355844
PUM2_chr2_20243737_20355844	0/0	t0009	3116	5	0	0	5	0	0	copy fasta	PUM2	chr2	20243737	20355844
PUM2_chr2_20243737_20355844	0/0	t0010	3116	5	0	2	2	0	1	copy fasta	PUM2	chr2	20243737	20355844
PUM2_chr2_20243737_20355844	0/0	t0011	3116	5	1	1	2	0	1	copy fasta	PUM2	chr2	20243737	20355844
PUM2_chr2_20243737_20355844	0/0	t0012	3115	4	4	0	0	0	0	copy fasta	PUM2	chr2	20243737	20355844
PUM2_chr2_20243737_20355844	0/0	t0013	3115	4	4	0	0	0	0	copy fasta	PUM2	chr2	20243737	20355844
PUM2_chr2_20243737_20355844	0/0	t0014	3115	3	3	0	0	0	0	copy fasta	PUM2	chr2	20243737	20355844
PUM2_chr2_20243737_20355844	0/0	t0015	3115	2	0	0	0	0	2	copy fasta	PUM2	chr2	20243737	20355844
PUM2_chr2_20243737_20355844	0/0	t0016	3115	2	0	1	0	0	1	copy fasta	PUM2	chr2	20243737	20355844
PUM2_chr2_20243737_20355844	0/0	t0017	3115	1	0	0	1	0	0	copy fasta	PUM2	chr2	20243737	20355844
PUM2_chr2_20243737_20355844	0/0	t0018	3115	1	0	0	1	0	0	copy fasta	PUM2	chr2	20243737	20355844
PUM2_chr2_20243737_20355844	0/0	t0019	3115	1	1	0	0	0	0	copy fasta	PUM2	chr2	20243737	20355844
PUM2_chr2_20243737_20355844	0/0	t0020	3115	1	0	0	0	0	1	copy fasta	PUM2	chr2	20243737	20355844
PUM2_chr2_20243737_20355844	0/0	t0021	3116	1	0	0	1	0	0	copy fasta	PUM2	chr2	20243737	20355844
PUM2_chr2_20243737_20355844	0/0	t0022	3116	1	1	0	0	0	0	copy fasta	PUM2	chr2	20243737	20355844
PUM3_chr9_2799152_2849095	1/1	t0001	241	409	81	71	204	11	40	copy fasta	PUM3	chr9	2799152	2849095
PUM3_chr9_2799152_2849095	0/0	t0002	241	3	2	1	0	0	0	copy fasta	PUM3	chr9	2799152	2849095
PUM3_chr9_2799152_2849095	0/0	t0003	241	3	3	0	0	0	0	copy fasta	PUM3	chr9	2799152	2849095
PUM3_chr9_2799152_2849095	0/0	t0004	241	2	2	0	0	0	0	copy fasta	PUM3	chr9	2799152	2849095
PUM3_chr9_2799152_2849095	0/0	t0005	241	1	1	0	0	0	0	copy fasta	PUM3	chr9	2799152	2849095
PUM3_chr9_2799152_2849095	0/0	t0006	241	1	0	0	0	1	0	copy fasta	PUM3	chr9	2799152	2849095
PUM3_chr9_2799152_2849095	0/0	t0007	241	1	1	0	0	0	0	copy fasta	PUM3	chr9	2799152	2849095
PURA_chr5_140109109_140130619	1/0	t0001	10543	99	26	27	27	8	10	copy fasta	PURA	chr5	140109109	140130619
PURA_chr5_140109109_140130619	0/1	t0002	10542	27	6	10	4	2	4	copy fasta	PURA	chr5	140109109	140130619