JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PURA_chr5_140109109_140130619	0/0	t0003	10543	8	8	0	0	0	0	copy fasta	PURA	chr5	140109109	140130619
PURA_chr5_140109109_140130619	0/0	t0004	10543	7	0	0	7	0	0	copy fasta	PURA	chr5	140109109	140130619
PURA_chr5_140109109_140130619	0/0	t0005	10543	4	0	1	1	0	2	copy fasta	PURA	chr5	140109109	140130619
PURA_chr5_140109109_140130619	0/0	t0006	10544	3	0	0	3	0	0	copy fasta	PURA	chr5	140109109	140130619
PURA_chr5_140109109_140130619	0/0	t0007	10542	3	3	0	0	0	0	copy fasta	PURA	chr5	140109109	140130619
PURA_chr5_140109109_140130619	0/0	t0008	10543	2	2	0	0	0	0	copy fasta	PURA	chr5	140109109	140130619
PURA_chr5_140109109_140130619	0/0	t0009	10543	2	2	0	0	0	0	copy fasta	PURA	chr5	140109109	140130619
PURA_chr5_140109109_140130619	0/0	t0010	10543	2	1	1	0	0	0	copy fasta	PURA	chr5	140109109	140130619
PURA_chr5_140109109_140130619	0/0	t0011	10543	2	2	0	0	0	0	copy fasta	PURA	chr5	140109109	140130619
PURA_chr5_140109109_140130619	0/0	t0012	10543	2	2	0	0	0	0	copy fasta	PURA	chr5	140109109	140130619
PURA_chr5_140109109_140130619	0/0	t0013	10543	2	0	1	1	0	0	copy fasta	PURA	chr5	140109109	140130619
PURA_chr5_140109109_140130619	0/0	t0014	10542	2	0	0	0	0	2	copy fasta	PURA	chr5	140109109	140130619
PURA_chr5_140109109_140130619	0/0	t0015	10543	1	0	0	1	0	0	copy fasta	PURA	chr5	140109109	140130619
PURA_chr5_140109109_140130619	0/0	t0016	10543	1	0	1	0	0	0	copy fasta	PURA	chr5	140109109	140130619
PURA_chr5_140109109_140130619	0/0	t0017	10543	1	1	0	0	0	0	copy fasta	PURA	chr5	140109109	140130619
PURA_chr5_140109109_140130619	0/0	t0018	10543	1	0	1	0	0	0	copy fasta	PURA	chr5	140109109	140130619
PURA_chr5_140109109_140130619	0/0	t0019	10543	1	0	1	0	0	0	copy fasta	PURA	chr5	140109109	140130619
PURA_chr5_140109109_140130619	0/0	t0020	10544	1	1	0	0	0	0	copy fasta	PURA	chr5	140109109	140130619
PURA_chr5_140109109_140130619	0/0	t0021	10543	1	0	0	1	0	0	copy fasta	PURA	chr5	140109109	140130619
PURA_chr5_140109109_140130619	0/0	t0022	10544	1	1	0	0	0	0	copy fasta	PURA	chr5	140109109	140130619
PURA_chr5_140109109_140130619	0/0	t0023	10543	1	1	0	0	0	0	copy fasta	PURA	chr5	140109109	140130619
PURA_chr5_140109109_140130619	0/0	t0024	10543	1	1	0	0	0	0	copy fasta	PURA	chr5	140109109	140130619
PURA_chr5_140109109_140130619	0/0	t0025	10543	1	1	0	0	0	0	copy fasta	PURA	chr5	140109109	140130619
PURA_chr5_140109109_140130619	0/0	t0026	10543	1	1	0	0	0	0	copy fasta	PURA	chr5	140109109	140130619
PURA_chr5_140109109_140130619	0/0	t0027	10543	1	0	0	0	1	0	copy fasta	PURA	chr5	140109109	140130619
PURA_chr5_140109109_140130619	0/0	t0028	10543	1	0	0	1	0	0	copy fasta	PURA	chr5	140109109	140130619
PURA_chr5_140109109_140130619	0/0	t0029	10543	1	1	0	0	0	0	copy fasta	PURA	chr5	140109109	140130619
PURA_chr5_140109109_140130619	0/0	t0030	10543	1	0	0	1	0	0	copy fasta	PURA	chr5	140109109	140130619
PURA_chr5_140109109_140130619	0/0	t0031	10543	1	1	0	0	0	0	copy fasta	PURA	chr5	140109109	140130619
PURA_chr5_140109109_140130619	0/0	t0032	10543	1	0	0	0	1	0	copy fasta	PURA	chr5	140109109	140130619
PURA_chr5_140109109_140130619	0/0	t0033	10543	1	0	0	1	0	0	copy fasta	PURA	chr5	140109109	140130619
PURA_chr5_140109109_140130619	0/0	t0034	10543	1	0	1	0	0	0	copy fasta	PURA	chr5	140109109	140130619
PURA_chr5_140109109_140130619	0/0	t0035	10543	1	1	0	0	0	0	copy fasta	PURA	chr5	140109109	140130619
PURA_chr5_140109109_140130619	0/0	t0036	10542	1	0	1	0	0	0	copy fasta	PURA	chr5	140109109	140130619
PURA_chr5_140109109_140130619	0/0	t0037	10542	1	0	0	0	0	1	copy fasta	PURA	chr5	140109109	140130619
PURA_chr5_140109109_140130619	0/0	t0038	10542	1	0	1	0	0	0	copy fasta	PURA	chr5	140109109	140130619
PURA_chr5_140109109_140130619	0/0	t0039	10542	1	0	0	0	0	1	copy fasta	PURA	chr5	140109109	140130619
PURB_chr7_44871299_44890530	0/0	t0001	8298	162	30	20	105	0	7	copy fasta	PURB	chr7	44871299	44890530
PURB_chr7_44871299_44890530	0/0	t0002	8297	83	11	18	40	7	7	copy fasta	PURB	chr7	44871299	44890530
PURB_chr7_44871299_44890530	0/0	t0003	8298	54	10	21	1	7	15	copy fasta	PURB	chr7	44871299	44890530
PURB_chr7_44871299_44890530	0/0	t0004	8299	9	0	0	9	0	0	copy fasta	PURB	chr7	44871299	44890530
PURB_chr7_44871299_44890530	0/1	t0005	8297	7	0	2	0	0	4	copy fasta	PURB	chr7	44871299	44890530
PURB_chr7_44871299_44890530	0/0	t0006	8298	6	6	0	0	0	0	copy fasta	PURB	chr7	44871299	44890530
PURB_chr7_44871299_44890530	0/0	t0007	8296	5	0	2	3	0	0	copy fasta	PURB	chr7	44871299	44890530
PURB_chr7_44871299_44890530	0/0	t0008	8298	4	4	0	0	0	0	copy fasta	PURB	chr7	44871299	44890530
PURB_chr7_44871299_44890530	0/0	t0009	8297	4	4	0	0	0	0	copy fasta	PURB	chr7	44871299	44890530
PURB_chr7_44871299_44890530	0/0	t0010	8297	4	0	4	0	0	0	copy fasta	PURB	chr7	44871299	44890530
PURB_chr7_44871299_44890530	0/0	t0011	8292	4	3	1	0	0	0	copy fasta	PURB	chr7	44871299	44890530
PURB_chr7_44871299_44890530	0/0	t0012	8297	4	4	0	0	0	0	copy fasta	PURB	chr7	44871299	44890530
PURB_chr7_44871299_44890530	0/0	t0013	8298	4	2	2	0	0	0	copy fasta	PURB	chr7	44871299	44890530