JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PURG_chr8_31025850_31038356	0/0	t0002	1175	5	0	0	5	0	0	copy fasta	PURG	chr8	31025850	31038356
PURG_chr8_31025850_31038356	0/0	t0003	1175	2	0	0	2	0	0	copy fasta	PURG	chr8	31025850	31038356
PURG_chr8_31025850_31038356	0/0	t0004	1175	2	0	0	2	0	0	copy fasta	PURG	chr8	31025850	31038356
PURG_chr8_31025850_31038356	0/0	t0005	1175	1	0	0	1	0	0	copy fasta	PURG	chr8	31025850	31038356
PURG_chr8_31025850_31038356	0/0	t0006	1175	1	0	1	0	0	0	copy fasta	PURG	chr8	31025850	31038356
PUS10_chr2_60935223_61023255	1/0	t0001	2436	143	33	31	56	8	14	copy fasta	PUS10	chr2	60935223	61023255
PUS10_chr2_60935223_61023255	0/0	t0002	2436	59	15	22	8	6	8	copy fasta	PUS10	chr2	60935223	61023255
PUS10_chr2_60935223_61023255	0/0	t0003	2436	23	23	0	0	0	0	copy fasta	PUS10	chr2	60935223	61023255
PUS10_chr2_60935223_61023255	0/0	t0004	2436	8	3	3	2	0	0	copy fasta	PUS10	chr2	60935223	61023255
PUS10_chr2_60935223_61023255	0/1	t0005	2435	3	0	2	0	0	0	copy fasta	PUS10	chr2	60935223	61023255
PUS10_chr2_60935223_61023255	0/0	t0006	2436	2	2	0	0	0	0	copy fasta	PUS10	chr2	60935223	61023255
PUS10_chr2_60935223_61023255	0/0	t0007	2436	2	2	0	0	0	0	copy fasta	PUS10	chr2	60935223	61023255
PUS10_chr2_60935223_61023255	0/0	t0008	2436	1	1	0	0	0	0	copy fasta	PUS10	chr2	60935223	61023255
PUS10_chr2_60935223_61023255	0/0	t0009	2436	1	1	0	0	0	0	copy fasta	PUS10	chr2	60935223	61023255
PUS10_chr2_60935223_61023255	0/0	t0010	2436	1	0	1	0	0	0	copy fasta	PUS10	chr2	60935223	61023255
PUS10_chr2_60935223_61023255	0/0	t0011	2436	1	0	1	0	0	0	copy fasta	PUS10	chr2	60935223	61023255
PUS10_chr2_60935223_61023255	0/0	t0012	2436	1	0	1	0	0	0	copy fasta	PUS10	chr2	60935223	61023255
PUS10_chr2_60935223_61023255	0/0	t0013	2436	1	0	1	0	0	0	copy fasta	PUS10	chr2	60935223	61023255
PUS1_chr12_131924276_131950896	0/1	t0001	2758	182	7	43	95	11	25	copy fasta	PUS1	chr12	131924276	131950896
PUS1_chr12_131924276_131950896	0/0	t0002	2758	45	18	3	23	1	0	copy fasta	PUS1	chr12	131924276	131950896
PUS1_chr12_131924276_131950896	0/0	t0003	2758	31	25	1	3	1	1	copy fasta	PUS1	chr12	131924276	131950896
PUS1_chr12_131924276_131950896	0/0	t0004	2759	15	0	6	9	0	0	copy fasta	PUS1	chr12	131924276	131950896
PUS1_chr12_131924276_131950896	0/0	t0005	2758	10	0	4	0	0	6	copy fasta	PUS1	chr12	131924276	131950896
PUS1_chr12_131924276_131950896	0/0	t0006	2758	9	9	0	0	0	0	copy fasta	PUS1	chr12	131924276	131950896
PUS1_chr12_131924276_131950896	1/0	t0007	2758	9	6	2	0	0	0	copy fasta	PUS1	chr12	131924276	131950896
PUS1_chr12_131924276_131950896	0/0	t0008	2759	9	0	8	0	0	1	copy fasta	PUS1	chr12	131924276	131950896
PUS1_chr12_131924276_131950896	0/0	t0009	2758	8	1	7	0	0	0	copy fasta	PUS1	chr12	131924276	131950896
PUS1_chr12_131924276_131950896	0/0	t0010	2758	5	0	0	5	0	0	copy fasta	PUS1	chr12	131924276	131950896
PUS1_chr12_131924276_131950896	0/0	t0011	2758	5	0	0	3	0	2	copy fasta	PUS1	chr12	131924276	131950896
PUS1_chr12_131924276_131950896	0/0	t0012	2759	5	5	0	0	0	0	copy fasta	PUS1	chr12	131924276	131950896
PUS1_chr12_131924276_131950896	0/0	t0013	2759	4	4	0	0	0	0	copy fasta	PUS1	chr12	131924276	131950896
PUS1_chr12_131924276_131950896	0/0	t0014	2758	3	3	0	0	0	0	copy fasta	PUS1	chr12	131924276	131950896
PUS1_chr12_131924276_131950896	0/0	t0015	2758	3	1	0	1	0	1	copy fasta	PUS1	chr12	131924276	131950896
PUS1_chr12_131924276_131950896	0/0	t0016	2758	2	2	0	0	0	0	copy fasta	PUS1	chr12	131924276	131950896
PUS1_chr12_131924276_131950896	0/0	t0017	2759	2	2	0	0	0	0	copy fasta	PUS1	chr12	131924276	131950896
PUS1_chr12_131924276_131950896	0/0	t0018	2758	2	1	0	0	0	1	copy fasta	PUS1	chr12	131924276	131950896
PUS1_chr12_131924276_131950896	0/0	t0019	2758	2	0	2	0	0	0	copy fasta	PUS1	chr12	131924276	131950896
PUS1_chr12_131924276_131950896	0/0	t0020	2758	2	2	0	0	0	0	copy fasta	PUS1	chr12	131924276	131950896
PUS1_chr12_131924276_131950896	0/0	t0021	2758	2	0	0	2	0	0	copy fasta	PUS1	chr12	131924276	131950896
PUS1_chr12_131924276_131950896	0/0	t0022	2758	2	0	0	0	0	2	copy fasta	PUS1	chr12	131924276	131950896
PUS1_chr12_131924276_131950896	0/0	t0023	2758	2	2	0	0	0	0	copy fasta	PUS1	chr12	131924276	131950896
PUS1_chr12_131924276_131950896	0/0	t0024	2758	1	1	0	0	0	0	copy fasta	PUS1	chr12	131924276	131950896
PUS1_chr12_131924276_131950896	0/0	t0025	2758	1	0	0	1	0	0	copy fasta	PUS1	chr12	131924276	131950896
PUS1_chr12_131924276_131950896	0/0	t0026	2758	1	1	0	0	0	0	copy fasta	PUS1	chr12	131924276	131950896
PUS1_chr12_131924276_131950896	0/0	t0027	2758	1	1	0	0	0	0	copy fasta	PUS1	chr12	131924276	131950896
PUS1_chr12_131924276_131950896	0/0	t0028	2758	1	0	0	1	0	0	copy fasta	PUS1	chr12	131924276	131950896
PUS1_chr12_131924276_131950896	0/0	t0029	2758	1	0	0	0	0	1	copy fasta	PUS1	chr12	131924276	131950896
PUS1_chr12_131924276_131950896	0/0	t0030	2758	1	0	0	1	0	0	copy fasta	PUS1	chr12	131924276	131950896
PUS1_chr12_131924276_131950896	0/0	t0031	2758	1	0	1	0	0	0	copy fasta	PUS1	chr12	131924276	131950896
PUS1_chr12_131924276_131950896	0/0	t0032	2758	1	1	0	0	0	0	copy fasta	PUS1	chr12	131924276	131950896