JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PUS1_chr12_131924276_131950896	0/0	t0033	2758	1	0	0	1	0	0	copy fasta	PUS1	chr12	131924276	131950896
PUS1_chr12_131924276_131950896	0/0	t0034	2758	1	0	0	0	0	1	copy fasta	PUS1	chr12	131924276	131950896
PUS1_chr12_131924276_131950896	0/0	t0035	2758	1	0	0	1	0	0	copy fasta	PUS1	chr12	131924276	131950896
PUS1_chr12_131924276_131950896	0/0	t0036	2758	1	1	0	0	0	0	copy fasta	PUS1	chr12	131924276	131950896
PUS1_chr12_131924276_131950896	0/0	t0037	2758	1	1	0	0	0	0	copy fasta	PUS1	chr12	131924276	131950896
PUS1_chr12_131924276_131950896	0/0	t0038	2758	1	1	0	0	0	0	copy fasta	PUS1	chr12	131924276	131950896
PUS1_chr12_131924276_131950896	0/0	t0039	2758	1	1	0	0	0	0	copy fasta	PUS1	chr12	131924276	131950896
PUS1_chr12_131924276_131950896	0/0	t0040	2758	1	0	0	0	1	0	copy fasta	PUS1	chr12	131924276	131950896
PUS1_chr12_131924276_131950896	0/0	t0041	2758	1	0	1	0	0	0	copy fasta	PUS1	chr12	131924276	131950896
PUS1_chr12_131924276_131950896	0/0	t0042	2759	1	0	0	1	0	0	copy fasta	PUS1	chr12	131924276	131950896
PUS1_chr12_131924276_131950896	0/0	t0043	2759	1	0	0	1	0	0	copy fasta	PUS1	chr12	131924276	131950896
PUS1_chr12_131924276_131950896	0/0	t0044	2759	1	0	0	0	0	1	copy fasta	PUS1	chr12	131924276	131950896
PUS1_chr12_131924276_131950896	0/0	t0045	2758	1	1	0	0	0	0	copy fasta	PUS1	chr12	131924276	131950896
PUS1_chr12_131924276_131950896	0/0	t0046	2758	1	1	0	0	0	0	copy fasta	PUS1	chr12	131924276	131950896
PUS3_chr11_125888485_125908206	0/0	t0001	383	130	28	16	65	6	15	copy fasta	PUS3	chr11	125888485	125908206
PUS3_chr11_125888485_125908206	0/0	t0002	383	72	2	17	39	1	13	copy fasta	PUS3	chr11	125888485	125908206
PUS3_chr11_125888485_125908206	0/0	t0003	384	71	29	2	36	2	2	copy fasta	PUS3	chr11	125888485	125908206
PUS3_chr11_125888485_125908206	0/1	t0004	384	67	22	12	25	2	5	copy fasta	PUS3	chr11	125888485	125908206
PUS3_chr11_125888485_125908206	0/0	t0005	384	64	8	23	25	2	6	copy fasta	PUS3	chr11	125888485	125908206
PUS3_chr11_125888485_125908206	0/0	t0006	384	16	0	0	16	0	0	copy fasta	PUS3	chr11	125888485	125908206
PUS3_chr11_125888485_125908206	1/0	t0007	384	16	3	7	0	1	4	copy fasta	PUS3	chr11	125888485	125908206
PUS3_chr11_125888485_125908206	0/0	t0008	383	6	5	0	0	0	1	copy fasta	PUS3	chr11	125888485	125908206
PUS3_chr11_125888485_125908206	0/0	t0009	384	4	0	0	4	0	0	copy fasta	PUS3	chr11	125888485	125908206
PUS3_chr11_125888485_125908206	0/0	t0010	385	1	0	1	0	0	0	copy fasta	PUS3	chr11	125888485	125908206
PUS3_chr11_125888485_125908206	0/0	t0011	385	1	1	0	0	0	0	copy fasta	PUS3	chr11	125888485	125908206
PUS3_chr11_125888485_125908206	0/0	t0012	384	1	0	0	1	0	0	copy fasta	PUS3	chr11	125888485	125908206
PUS3_chr11_125888485_125908206	0/0	t0013	383	1	0	0	1	0	0	copy fasta	PUS3	chr11	125888485	125908206
PUS7L_chr12_43713992_43763790	1/0	t0001	11462	51	5	13	20	2	10	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	t0002	11464	51	1	8	31	4	7	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	t0003	11462	27	7	2	17	0	1	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	t0004	11462	15	0	4	7	0	4	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/1	t0005	11469	11	1	7	0	1	1	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	t0006	11463	11	3	3	0	1	4	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	t0007	11467	10	0	0	9	0	1	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	t0008	11463	7	7	0	0	0	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	t0009	11462	6	0	0	6	0	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	t0010	11462	6	6	0	0	0	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	t0011	11462	5	4	1	0	0	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	t0012	11462	5	0	0	5	0	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	t0013	11463	5	5	0	0	0	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	t0014	11462	4	3	1	0	0	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	t0015	11462	4	1	1	0	1	1	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	t0016	11463	4	4	0	0	0	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	t0017	11463	4	4	0	0	0	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	t0018	11459	4	4	0	0	0	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	t0019	11462	4	3	1	0	0	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	t0020	11462	3	3	0	0	0	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	t0021	11464	3	0	0	2	1	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	t0022	11464	3	0	0	0	0	3	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	t0023	11463	2	2	0	0	0	0	copy fasta	PUS7L	chr12	43713992	43763790