Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ATPSCKMT_chr5_10220507_10254888	0/0	t0023	1950	1	1	0	0	0	0	copy fasta	ATPSCKMT	chr5	10220507	10254888
ATRAID_chr2_27207041_27222157	0/0	t0001	537	143	14	31	70	11	17	copy fasta	ATRAID	chr2	27207041	27222157
ATRAID_chr2_27207041_27222157	1/1	t0002	538	115	46	29	19	5	14	copy fasta	ATRAID	chr2	27207041	27222157
ATRAID_chr2_27207041_27222157	0/0	t0003	538	24	19	5	0	0	0	copy fasta	ATRAID	chr2	27207041	27222157
ATRAID_chr2_27207041_27222157	0/0	t0004	538	16	11	2	0	0	3	copy fasta	ATRAID	chr2	27207041	27222157
ATRAID_chr2_27207041_27222157	0/0	t0005	538	2	2	0	0	0	0	copy fasta	ATRAID	chr2	27207041	27222157
ATRAID_chr2_27207041_27222157	0/0	t0006	537	1	0	0	1	0	0	copy fasta	ATRAID	chr2	27207041	27222157
ATRAID_chr2_27207041_27222157	0/0	t0007	537	1	0	1	0	0	0	copy fasta	ATRAID	chr2	27207041	27222157
ATRIP_chr3_48441737_48472645	0/0	t0001	2201	157	33	24	76	9	15	copy fasta	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	1/0	t0002	2201	109	18	19	59	4	8	copy fasta	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	0/1	t0003	2201	29	1	9	7	2	9	copy fasta	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	0/0	t0004	2201	12	8	4	0	0	0	copy fasta	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	0/0	t0005	2201	9	0	0	9	0	0	copy fasta	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	0/0	t0006	2201	6	0	5	0	1	0	copy fasta	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	0/0	t0007	2201	6	4	2	0	0	0	copy fasta	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	0/0	t0008	2201	6	6	0	0	0	0	copy fasta	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	0/0	t0009	2201	4	0	0	1	0	3	copy fasta	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	0/0	t0010	2201	4	0	1	2	0	1	copy fasta	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	0/0	t0011	2200	3	3	0	0	0	0	copy fasta	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	0/0	t0012	2201	3	0	0	3	0	0	copy fasta	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	0/0	t0013	2201	2	2	0	0	0	0	copy fasta	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	0/0	t0014	2201	2	2	0	0	0	0	copy fasta	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	0/0	t0015	2201	1	0	0	1	0	0	copy fasta	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	0/0	t0016	2201	1	0	0	1	0	0	copy fasta	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	0/0	t0017	2201	1	0	0	1	0	0	copy fasta	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	0/0	t0018	2201	1	1	0	0	0	0	copy fasta	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	0/0	t0019	2201	1	1	0	0	0	0	copy fasta	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	0/0	t0020	2201	1	0	0	1	0	0	copy fasta	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	0/0	t0021	2201	1	0	0	1	0	0	copy fasta	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	0/0	t0022	2201	1	1	0	0	0	0	copy fasta	ATRIP	chr3	48441737	48472645
ATRNL1_chr10_115088365_115953999	0/0	t0001	4609	25	6	7	9	1	2	copy fasta	ATRNL1	chr10	115088365	115953999
ATRNL1_chr10_115088365_115953999	0/0	t0002	4609	12	7	2	2	1	0	copy fasta	ATRNL1	chr10	115088365	115953999
ATRNL1_chr10_115088365_115953999	0/0	t0003	4607	9	2	5	1	0	1	copy fasta	ATRNL1	chr10	115088365	115953999
ATRNL1_chr10_115088365_115953999	0/0	t0004	4609	8	0	2	6	0	0	copy fasta	ATRNL1	chr10	115088365	115953999
ATRNL1_chr10_115088365_115953999	0/0	t0005	4609	7	0	4	0	2	1	copy fasta	ATRNL1	chr10	115088365	115953999
ATRNL1_chr10_115088365_115953999	0/0	t0006	4609	6	4	0	2	0	0	copy fasta	ATRNL1	chr10	115088365	115953999
ATRNL1_chr10_115088365_115953999	0/0	t0007	4609	5	5	0	0	0	0	copy fasta	ATRNL1	chr10	115088365	115953999
ATRNL1_chr10_115088365_115953999	0/0	t0008	4607	5	5	0	0	0	0	copy fasta	ATRNL1	chr10	115088365	115953999
ATRNL1_chr10_115088365_115953999	0/1	t0009	4609	4	0	2	0	0	1	copy fasta	ATRNL1	chr10	115088365	115953999
ATRNL1_chr10_115088365_115953999	0/0	t0010	4609	3	3	0	0	0	0	copy fasta	ATRNL1	chr10	115088365	115953999
ATRNL1_chr10_115088365_115953999	0/0	t0011	4609	3	3	0	0	0	0	copy fasta	ATRNL1	chr10	115088365	115953999
ATRNL1_chr10_115088365_115953999	0/0	t0012	4609	2	2	0	0	0	0	copy fasta	ATRNL1	chr10	115088365	115953999
ATRNL1_chr10_115088365_115953999	0/0	t0013	4607	2	2	0	0	0	0	copy fasta	ATRNL1	chr10	115088365	115953999
ATRNL1_chr10_115088365_115953999	0/0	t0014	4607	2	1	1	0	0	0	copy fasta	ATRNL1	chr10	115088365	115953999
ATRNL1_chr10_115088365_115953999	0/0	t0015	4609	2	2	0	0	0	0	copy fasta	ATRNL1	chr10	115088365	115953999
ATRNL1_chr10_115088365_115953999	0/0	t0016	4609	1	1	0	0	0	0	copy fasta	ATRNL1	chr10	115088365	115953999
ATRNL1_chr10_115088365_115953999	0/0	t0017	4607	1	1	0	0	0	0	copy fasta	ATRNL1	chr10	115088365	115953999
ATRNL1_chr10_115088365_115953999	0/0	t0018	4607	1	1	0	0	0	0	copy fasta	ATRNL1	chr10	115088365	115953999
ATRNL1_chr10_115088365_115953999	0/0	t0019	4605	1	1	0	0	0	0	copy fasta	ATRNL1	chr10	115088365	115953999
ATRNL1_chr10_115088365_115953999	0/0	t0020	4609	1	0	1	0	0	0	copy fasta	ATRNL1	chr10	115088365	115953999