JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PUS7L_chr12_43713992_43763790	0/0	t0024	11463	2	2	0	0	0	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	t0025	11463	2	2	0	0	0	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	t0026	11462	2	2	0	0	0	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	t0027	11462	2	0	0	0	2	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	t0028	11462	2	0	2	0	0	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	t0029	11461	2	2	0	0	0	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	t0030	11464	2	0	0	2	0	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	t0031	11462	2	0	2	0	0	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	t0032	11463	2	2	0	0	0	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	t0033	11469	1	1	0	0	0	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	t0034	11469	1	1	0	0	0	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	t0035	11463	1	1	0	0	0	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	t0036	11463	1	1	0	0	0	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	t0037	11462	1	0	0	1	0	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	t0038	11462	1	1	0	0	0	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	t0039	11462	1	1	0	0	0	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	t0040	11461	1	0	1	0	0	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	t0041	11464	1	1	0	0	0	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	t0042	11463	1	1	0	0	0	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	t0043	11463	1	1	0	0	0	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	t0044	11469	1	1	0	0	0	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	t0045	11464	1	0	0	0	0	1	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	t0046	11464	1	0	0	0	0	1	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	t0047	11464	1	0	1	0	0	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	t0048	11461	1	0	1	0	0	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	t0049	11462	1	0	0	1	0	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	t0050	11462	1	1	0	0	0	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	t0051	11462	1	0	1	0	0	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	t0052	11462	1	1	0	0	0	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	t0053	11462	1	0	0	1	0	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	t0054	11462	1	0	1	0	0	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	t0055	11516	1	0	0	1	0	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	t0056	11462	1	0	0	0	0	1	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	t0057	11461	1	1	0	0	0	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	t0058	11462	1	1	0	0	0	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	t0059	11462	1	1	0	0	0	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	t0060	11462	1	1	0	0	0	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	t0061	11464	1	0	0	1	0	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	t0062	11464	1	0	0	1	0	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	t0063	11464	1	0	1	0	0	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	t0064	11464	1	0	0	1	0	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	t0065	11464	1	0	0	1	0	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	t0066	11463	1	0	0	0	1	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	t0067	11463	1	1	0	0	0	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	t0068	11463	1	1	0	0	0	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	t0069	11462	1	0	1	0	0	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	t0070	11464	1	0	1	0	0	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	t0071	11463	1	0	1	0	0	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	t0072	11462	1	0	0	0	1	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	t0073	11464	1	0	0	0	0	1	copy fasta	PUS7L	chr12	43713992	43763790