JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PVALEF_chr17_81160507_81188166	0/0	t0021	904	1	1	0	0	0	0	copy fasta	PVALEF	chr17	81160507	81188166
PVALEF_chr17_81160507_81188166	0/0	t0022	904	1	0	1	0	0	0	copy fasta	PVALEF	chr17	81160507	81188166
PVALEF_chr17_81160507_81188166	0/0	t0023	905	1	0	0	1	0	0	copy fasta	PVALEF	chr17	81160507	81188166
PVALEF_chr17_81160507_81188166	0/0	t0024	904	1	0	0	1	0	0	copy fasta	PVALEF	chr17	81160507	81188166
PVALEF_chr17_81160507_81188166	0/0	t0025	904	1	0	0	1	0	0	copy fasta	PVALEF	chr17	81160507	81188166
PVRIG_chr7_100214949_100226490	0/1	t0001	258	176	47	31	59	10	28	copy fasta	PVRIG	chr7	100214949	100226490
PVRIG_chr7_100214949_100226490	1/0	t0002	262	160	12	36	93	3	15	copy fasta	PVRIG	chr7	100214949	100226490
PVRIG_chr7_100214949_100226490	0/0	t0003	258	50	21	5	14	3	7	copy fasta	PVRIG	chr7	100214949	100226490
PVRIG_chr7_100214949_100226490	0/0	t0004	258	5	5	0	0	0	0	copy fasta	PVRIG	chr7	100214949	100226490
PVRIG_chr7_100214949_100226490	0/0	t0005	258	1	1	0	0	0	0	copy fasta	PVRIG	chr7	100214949	100226490
PVRIG_chr7_100214949_100226490	0/0	t0006	258	1	0	0	1	0	0	copy fasta	PVRIG	chr7	100214949	100226490
PVRIG_chr7_100214949_100226490	0/0	t0007	258	1	0	0	1	0	0	copy fasta	PVRIG	chr7	100214949	100226490
PVR_chr19_44638910_44671162	0/0	t0001	4538	49	2	3	37	2	5	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0002	4539	48	1	10	29	1	7	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0003	4539	28	0	6	17	2	3	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0004	4537	27	0	10	15	0	2	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0005	4540	19	2	6	8	0	3	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0006	4538	15	0	3	11	0	1	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0007	4539	14	9	1	4	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0008	4539	13	3	0	7	1	2	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0009	4540	10	0	1	4	3	2	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0010	4539	10	0	1	4	0	5	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0011	4539	7	0	0	7	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	1/0	t0012	4539	5	1	2	0	0	1	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0013	4539	5	1	3	0	0	1	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0014	4539	5	0	0	4	1	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0015	4539	5	0	4	0	1	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0016	4539	5	1	0	2	0	2	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0017	4538	4	0	0	4	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0018	4540	4	0	3	0	1	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0019	4540	4	1	0	2	0	1	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0020	4541	3	0	3	0	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0021	4538	3	0	0	3	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0022	4538	3	0	2	0	1	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/1	t0023	4541	3	0	2	0	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0024	4540	3	0	1	0	2	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0025	4537	2	2	0	0	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0026	4539	2	2	0	0	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0027	4538	2	2	0	0	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0028	4538	2	2	0	0	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0029	4538	2	2	0	0	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0030	4538	2	0	1	0	0	1	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0031	4540	2	0	1	1	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0032	4529	2	0	0	2	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0033	4540	2	0	1	0	0	1	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0034	4541	2	0	1	0	0	1	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0035	4538	2	0	2	0	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0036	4541	2	2	0	0	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0037	4540	2	2	0	0	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0038	4539	2	2	0	0	0	0	copy fasta	PVR	chr19	44638910	44671162