JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PVR_chr19_44638910_44671162	0/0	t0039	4534	2	1	1	0	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0040	4538	2	2	0	0	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0041	4528	2	0	0	2	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0042	4527	2	0	0	2	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0043	4540	2	1	0	1	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0044	4541	2	2	0	0	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0045	4540	2	2	0	0	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0046	4535	2	2	0	0	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0047	4540	2	2	0	0	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0048	4539	1	1	0	0	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0049	4539	1	0	0	1	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0050	4540	1	1	0	0	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0051	4537	1	1	0	0	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0052	4539	1	1	0	0	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0053	4538	1	1	0	0	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0054	4539	1	0	0	0	0	1	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0055	4540	1	0	0	0	0	1	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0056	4538	1	1	0	0	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0057	4541	1	1	0	0	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0058	4540	1	1	0	0	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0059	4541	1	1	0	0	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0060	4538	1	0	0	1	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0061	4527	1	0	0	1	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0062	4540	1	0	0	1	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0063	4539	1	0	1	0	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0064	4540	1	0	0	1	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0065	4539	1	0	0	1	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0066	4539	1	0	0	1	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0067	4539	1	0	0	0	0	1	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0068	4537	1	1	0	0	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0069	4538	1	1	0	0	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0070	4539	1	0	1	0	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0071	4541	1	0	1	0	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0072	4539	1	1	0	0	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0073	4541	1	0	1	0	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0074	4541	1	1	0	0	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0075	4540	1	0	1	0	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0076	4539	1	1	0	0	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0077	4540	1	1	0	0	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0078	4537	1	0	0	1	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0079	4509	1	0	0	1	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0080	4538	1	0	0	1	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0081	4540	1	0	0	1	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0082	4540	1	1	0	0	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0083	4538	1	1	0	0	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0084	4539	1	0	0	0	1	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0085	4534	1	1	0	0	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0086	4539	1	0	0	0	0	1	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0087	4539	1	0	0	1	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0088	4539	1	0	1	0	0	0	copy fasta	PVR	chr19	44638910	44671162