JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PVR_chr19_44638910_44671162	0/0	t0089	4539	1	1	0	0	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0090	4538	1	0	1	0	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0091	4535	1	1	0	0	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0092	4538	1	1	0	0	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0093	4539	1	1	0	0	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0094	4538	1	1	0	0	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0095	4536	1	0	0	0	0	1	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0096	4538	1	0	0	1	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0097	4540	1	0	0	0	0	1	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0098	4538	1	0	0	1	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0099	4584	1	0	0	1	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0100	4538	1	0	0	1	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0101	4538	1	1	0	0	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0102	4538	1	1	0	0	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0103	4539	1	0	1	0	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0104	4541	1	1	0	0	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0105	4539	1	1	0	0	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0106	4538	1	1	0	0	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0107	4539	1	1	0	0	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0108	4539	1	1	0	0	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0109	4539	1	1	0	0	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0110	4538	1	1	0	0	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0111	4539	1	1	0	0	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0112	4541	1	1	0	0	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0113	4539	1	1	0	0	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0114	4538	1	1	0	0	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0115	4538	1	1	0	0	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0116	4540	1	0	0	1	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0117	4537	1	1	0	0	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0118	4538	1	1	0	0	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0119	4538	1	1	0	0	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0120	4525	1	1	0	0	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	t0121	4538	1	0	0	1	0	0	copy fasta	PVR	chr19	44638910	44671162
PWP1_chr12_107680799_107718162	0/0	t0001	1044	163	20	37	79	8	19	copy fasta	PWP1	chr12	107680799	107718162
PWP1_chr12_107680799_107718162	1/1	t0002	1044	152	45	25	53	5	22	copy fasta	PWP1	chr12	107680799	107718162
PWP1_chr12_107680799_107718162	0/0	t0003	1044	8	7	0	0	0	1	copy fasta	PWP1	chr12	107680799	107718162
PWP1_chr12_107680799_107718162	0/0	t0004	1044	5	5	0	0	0	0	copy fasta	PWP1	chr12	107680799	107718162
PWP1_chr12_107680799_107718162	0/0	t0005	1044	4	4	0	0	0	0	copy fasta	PWP1	chr12	107680799	107718162
PWP1_chr12_107680799_107718162	0/0	t0006	1044	3	0	0	3	0	0	copy fasta	PWP1	chr12	107680799	107718162
PWP1_chr12_107680799_107718162	0/0	t0007	1044	2	0	1	0	1	0	copy fasta	PWP1	chr12	107680799	107718162
PWP1_chr12_107680799_107718162	0/0	t0008	1044	1	0	0	1	0	0	copy fasta	PWP1	chr12	107680799	107718162
PWP1_chr12_107680799_107718162	0/0	t0009	1044	1	1	0	0	0	0	copy fasta	PWP1	chr12	107680799	107718162
PWP1_chr12_107680799_107718162	0/0	t0010	1044	1	0	1	0	0	0	copy fasta	PWP1	chr12	107680799	107718162
PWP1_chr12_107680799_107718162	0/0	t0011	1044	1	1	0	0	0	0	copy fasta	PWP1	chr12	107680799	107718162
PWP1_chr12_107680799_107718162	0/0	t0012	1044	1	1	0	0	0	0	copy fasta	PWP1	chr12	107680799	107718162
PWP2_chr21_44102399_44136181	0/0	t0001	429	44	28	3	13	0	0	copy fasta	PWP2	chr21	44102399	44136181
PWP2_chr21_44102399_44136181	0/0	t0002	429	26	13	3	10	0	0	copy fasta	PWP2	chr21	44102399	44136181
PWP2_chr21_44102399_44136181	0/0	t0003	429	10	10	0	0	0	0	copy fasta	PWP2	chr21	44102399	44136181
PWP2_chr21_44102399_44136181	0/0	t0004	425	2	1	1	0	0	0	copy fasta	PWP2	chr21	44102399	44136181
PWP2_chr21_44102399_44136181	0/0	t0005	429	1	0	1	0	0	0	copy fasta	PWP2	chr21	44102399	44136181